Browse Element(s) Details


OsAffx.18783.1.S1_at

Description tigr:9639.m00998
TID=OsAffx.18783.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10530OsAffx.30187.2.S1_at9/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_at4/1111+5763714..5768096hypothetical protein
LOC_Os11g10530Os.55230.1.S1_x_at2/1111+5763714..5768096hypothetical protein
LOC_Os11g10530OsAffx.18968.1.S1_at1/1111+5763714..5768096hypothetical protein
LOC_Os11g10540OsAffx.18782.1.S1_at11/1111+5769517..5773026hypothetical protein
LOC_Os11g10550Os.50870.2.S1_at10/1111+5772483..5783307Leucine Rich Repeat family protein, expressed
LOC_Os11g10560OsAffx.18783.1.S1_at11/1111+5788060..5789251hypothetical protein
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10580NANA11+5799043..5801418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10590Os.9836.1.S1_at4/1111+5804219..5804485hypothetical protein
LOC_Os11g10600OsAffx.18785.1.S1_at10/1111+5808753..5811520hypothetical protein
LOC_Os11g10600OsAffx.25936.5.S1_x_at1/1111+5808753..5811520hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18783.1.S1_at--164--8011Chr11:5789194..5789218 (25 bp)
GGAGGAGATCGGGAGAATCGGCTTG
LOC_Os11g10560
OsAffx.18783.1.S1_at--556--8031Chr11:5789183..5789207 (25 bp)
GGAGAATCGGCTTGCGGGCGTCGGG
LOC_Os11g10560
OsAffx.18783.1.S1_at--1074--951Chr11:5788886..5789181 (25 bp)
AGGACCAGATGAGCGTTCGAATCGA
LOC_Os11g10560
OsAffx.18783.1.S1_at--273--5851Chr11:5788884..5789179 (25 bp)
GACCAGATGAGCGTTCGAATCGATC
LOC_Os11g10560
OsAffx.18783.1.S1_at--656--4351Chr11:5788882..5789177 (25 bp)
CCAGATGAGCGTTCGAATCGATCTC
LOC_Os11g10560
OsAffx.18783.1.S1_at--240--1311Chr11:5788880..5789175 (25 bp)
AGATGAGCGTTCGAATCGATCTCTC
LOC_Os11g10560
OsAffx.18783.1.S1_at--398--4011Chr11:5788851..5788875 (25 bp)
CGTCCAGCACCGGTGTTGACTGATG
LOC_Os11g10560
OsAffx.18783.1.S1_at--398--7271Chr11:5788850..5788874 (25 bp)
GTCCAGCACCGGTGTTGACTGATGG
LOC_Os11g10560
OsAffx.18783.1.S1_at--358--9231Chr11:5788849..5788873 (25 bp)
TCCAGCACCGGTGTTGACTGATGGA
LOC_Os11g10560
OsAffx.18783.1.S1_at--1109--2131Chr11:5788219..5788555 (25 bp)
ACAGATTGTTGGGAGCCGGCTTGCA
LOC_Os11g10560
OsAffx.18783.1.S1_at--607--1251Chr11:5788217..5788553 (25 bp)
AGATTGTTGGGAGCCGGCTTGCAAT
LOC_Os11g10560
Target Sequence 
GGAGGAGATCGGGAGAATCGGCTTGCGGGCGTCGGGGAGGACCAGATGAGCGTTCGAATCGATCTCTCCAGCCGTCCAGC
ACCGGTGTTGACTGATGGAGAAGCTGGGAGCGGCATCGGCAGAGGCGACAGCAGCGTGCCTCCGCATCGGCTTCATCTCC
GGCGCCGGCGCCGGCCCCCGCCCCTGCCACTCCCTCACCTCGTCCTCCCCCAGTCAGCGCCGCCGCCCCTATCCGCCTCC
CCCGCCCCCATCCGCCTCCGCCGCCACCGCCACCCCCATCCGCCGCCACCGCCGCCACCCCCATCAGCCGCTGCCCCTCG
GTCAGCTCTTCCCGCCCTCCACTCCCTCAACGTGTGGTTAGGGTTTGACTCCATGGATGACTCCACCTGGCTACAGATTG
TTGGGAGCCGGCTTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis