Browse Element(s) Details


Os.50874.1.S1_at

Description gb:AK059139.1
DB_XREF= gi:32969157
TID=Os.50874.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H10, full insert sequence.
FL= gb:AK059139.1 gb:AK072028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g164509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16430Os.46314.2.S1_x_at1/112+9374340..9376532transposon protein, putative, unclassified
LOC_Os02g16440Os.38751.1.A1_at6/112+9378677..9381091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16440OsAffx.8469.1.S1_x_at3/112+9378677..9381091retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16450Os.50874.1.S1_at9/112+9391343..9393827expressed protein
LOC_Os02g16460OsAffx.5632.1.S1_x_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16460OsAffx.5632.1.S1_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16470NANA2+9404825..9405634retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16480OsAffx.24278.1.S1_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16480OsAffx.24278.1.S1_x_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16490Os.5930.1.S1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490OsAffx.18631.1.A1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490Os.5930.1.S1_x_at1/112+9409105..9413550expressed protein
LOC_Os02g16500Os.12412.1.S1_at11/112+9416886..9418700expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50874.1.S1_at--658--4471Chr02:9391770..9391794 (25 bp)
GCCTGTACAGAAGTTTTGACCAAAT
LOC_Os02g16450
Os.50874.1.S1_at--807--10751Chr02:9391755..9391779 (25 bp)
TTGACCAAATACCAGTTTTCACCGG
LOC_Os02g16450
Os.50874.1.S1_at--1039--9471Chr02:9391737..9391761 (25 bp)
TCACCGGTTTTGTTAGGGCACTAAT
LOC_Os02g16450
Os.50874.1.S1_at--826--2291Chr02:9391698..9391722 (25 bp)
AAATGGACTATGTTTCAGGCTACTA
LOC_Os02g16450
Os.50874.1.S1_at--515--1371Chr02:9391622..9391646 (25 bp)
AGACGTCATACCTCTAAACCTGTAA
LOC_Os02g16450
Os.50874.1.S1_at--257--7071Chr02:9391564..9391588 (25 bp)
GTAAGTCTGTATTCTGTCAGCCGAT
LOC_Os02g16450
Os.50874.1.S1_at--1128--1011Chr02:9391524..9391548 (25 bp)
AGGTTTGTTGTGTCCTCATGAGTTA
LOC_Os02g16450
Os.50874.1.S1_at--544--2551Chr02:9391473..9391497 (25 bp)
AACTGTTTGTTGTGCCCTCATGAGT
LOC_Os02g16450
Os.50874.1.S1_at--364--10411NONE
TTATTGACTACTTTCGACATCGGCT
NONE
Os.50874.1.S1_at--47--5651Chr02:9391346..9391370 (25 bp)
GACATCGGCTACCTTACAAGTACAT
LOC_Os02g16450
Os.50874.1.S1_at--607--3511Chr02:9391324..9391348 (25 bp)
CATGTGATGCTTCATGCTTGTGTTC
NONE
Target Sequence 
GCCTGTACAGAAGTTTTGACCAAATACCAGTTTTCACCGGTTTTGTTAGGGCACTAATCATTCTTTATGACGAAATGGAC
TATGTTTCAGGCTACTAGGATACTAATTGTTAATTCGTTTGGANGTGTTGGACTACGTTCCAATTAATAGACGTCATACC
TCTAAACCTGTAAATGGATTTTTCATTAGAGATGGATGGAATGCTTGTAAGTCTGTATTCTGTCAGCCGATTGGAATTGC
TGTGTTAGGTTTGTTGTGTCCTCATGAGTTATGAGGATTGAGGAGTGTTGAAAGGACAACTGTTTGTTGTGCCCTCATGA
GTTATGAGGATTGAGGGGTGTTGAAGCATTCAAGGATTCAAGGTTCTTTGCTTTCCAGTTTTTTCTTTTCTTTTCTTGAT
TATTGACTACTTTCGACATCGGCTACCTTACAAGTACATGTGATGCTTCATGCTTGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis