Browse Element(s) Details


OsAffx.18631.1.A1_at

Description tigr:9639.m00102
TID=OsAffx.18631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g164901/11expressed protein
LOC_Os04g398141/11Cyanogenic beta-glucosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16450Os.50874.1.S1_at9/112+9391343..9393827expressed protein
LOC_Os02g16460OsAffx.5632.1.S1_x_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16460OsAffx.5632.1.S1_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16470NANA2+9404825..9405634retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16480OsAffx.24278.1.S1_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16480OsAffx.24278.1.S1_x_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16490Os.5930.1.S1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490OsAffx.18631.1.A1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490Os.5930.1.S1_x_at1/112+9409105..9413550expressed protein
LOC_Os02g16500Os.12412.1.S1_at11/112+9416886..9418700expressed protein
LOC_Os02g16510NANA2+9421771..9425121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16520NANA2+9427302..9428320retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18631.1.A1_at--1014--8571Chr11:533665..533689 (25 bp)
TGGTTCAATGAAGCCGGCCGATGGA
NONE
OsAffx.18631.1.A1_at--486--8651Chr11:533807..533831 (25 bp)
TGGGCCAATAGTGACTTCGTCTTCG
NONE
OsAffx.18631.1.A1_at--84--8431Chr11:533809..533833 (25 bp)
GGCCAATAGTGACTTCGTCTTCGGG
NONE
OsAffx.18631.1.A1_at--42--3191Chr11:533812..533836 (25 bp)
CAATAGTGACTTCGTCTTCGGGCGT
NONE
OsAffx.18631.1.A1_at--782--271Chr11:533814..533838 (25 bp)
ATAGTGACTTCGTCTTCGGGCGTAG
NONE
OsAffx.18631.1.A1_at--690--1111Chr11:533816..533840 (25 bp)
AGTGACTTCGTCTTCGGGCGTAGTA
NONE
OsAffx.18631.1.A1_at--853--7331Chr11:533817..533841 (25 bp)
GTGACTTCGTCTTCGGGCGTAGTAA
NONE
OsAffx.18631.1.A1_at--920--6251Chr11:533922..533946 (25 bp)
GATGACAGCGGTGTCTTTTGGCGTC
NONE
OsAffx.18631.1.A1_at--1069--671Chr11:533923..533947 (25 bp)
ATGACAGCGGTGTCTTTTGGCGTCG
NONE
OsAffx.18631.1.A1_at--730--6131Chr11:533958..533982 (25 bp)
GAGGGTGTTATTTTAGAGTCTTCGT
NONE
OsAffx.18631.1.A1_at--492--8778Chr11:533963..533987 (25 bp)
TGTTATTTTAGAGTCTTCGTGTCGT
NONE
Target Sequence 
TGGTTCAATGAAGCCGGCCGATGGAGGGGCGTCGGTCAGGTGTGGTGGAAGCCATGTGCCGCCGATGTTCAGATGGCGGA
TTCGGATTGGGTGACGTACCATGGTGGTAGAGGGTGCCGAGCGAAAGCTTAGCCCAATTCTTTGGGCCAATAGTGACTTC
GTCTTCGGGCGTAGTAACCCTCTTGAGGGCACTGTTGAGGTATCCCTCCTCCCTCGGCAAGGAGCTCTGGGTGAAAACCT
TGTCCAGTCTTTGGATGGATGACAGCGGTGTCTTTTGGCGTCGTGACCCTCGTGAGGGTGTTATTTTAGAGTCTTCGTGT
CGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18631.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis