Browse Element(s) Details


Os.12412.1.S1_at

Description gb:AK069678.1
DB_XREF= gi:32979702
TID=Os.12412.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028A06, full insert sequence.
FL= gb:AK069678.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16450Os.50874.1.S1_at9/112+9391343..9393827expressed protein
LOC_Os02g16460OsAffx.5632.1.S1_x_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16460OsAffx.5632.1.S1_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16470NANA2+9404825..9405634retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16480OsAffx.24278.1.S1_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16480OsAffx.24278.1.S1_x_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16490Os.5930.1.S1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490OsAffx.18631.1.A1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490Os.5930.1.S1_x_at1/112+9409105..9413550expressed protein
LOC_Os02g16500Os.12412.1.S1_at11/112+9416886..9418700expressed protein
LOC_Os02g16510NANA2+9421771..9425121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16520NANA2+9427302..9428320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16529OsAffx.24188.1.S1_x_at10/112+9440861..9441169hypothetical protein
LOC_Os02g16529OsAffx.24188.1.S1_at8/112+9440861..9441169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12412.1.S1_at--130--7671Chr02:9417168..9417192 (25 bp)
GGGATCGCATACATCCTGATGCTGG
LOC_Os02g16500
Os.12412.1.S1_at--937--3031Chr02:9417121..9417145 (25 bp)
AATCCATCCACTGGATGCTTCTTCT
LOC_Os02g16500
Os.12412.1.S1_at--28--10571Chr02:9417103..9417127 (25 bp)
TTCTTCTCCCTACAAGCTTTTCTAA
LOC_Os02g16500
Os.12412.1.S1_at--60--10251Chr02:9417085..9417109 (25 bp)
TTTCTAATCCCTTGTTCTTCCTTCA
LOC_Os02g16500
Os.12412.1.S1_at--1151--10531Chr02:9417071..9417095 (25 bp)
TTCTTCCTTCATCTGGCTTGGTTAG
LOC_Os02g16500
Os.12412.1.S1_at--605--3551Chr02:9417062..9417086 (25 bp)
CATCTGGCTTGGTTAGGGTAAATTC
LOC_Os02g16500
Os.12412.1.S1_at--761--10451Chr02:9417027..9417051 (25 bp)
TTAGCCATGGCGACGATTGTTAACA
LOC_Os02g16500
Os.12412.1.S1_at--687--6111Chr02:9416976..9417000 (25 bp)
GAGTGATTTGTCTGTCCATGATGGG
LOC_Os02g16500
Os.12412.1.S1_at--619--7711Chr02:9416952..9416976 (25 bp)
GGGTGGTATCAATCAGATCGTTGTT
LOC_Os02g16500
Os.12412.1.S1_at--1043--391Chr02:9416941..9416965 (25 bp)
ATCAGATCGTTGTTTGGTGGTGCGA
LOC_Os02g16500
Os.12412.1.S1_at--789--7731Chr02:9416923..9416947 (25 bp)
GGTGCGATTGGCTGTATTGGATTCC
LOC_Os02g16500
Target Sequence 
GGGATCGCATACATCCTGATGCTGGTGGCTCTTGTGCTCACCTACCTAATCCATCCACTGGATGCTTCTTCTCCCTACAA
GCTTTTCTAATCCCTTGTTCTTCCTTCATCTGGCTTGGTTAGGGTAAATTCTACTTATTATTTAGCCATGGCGACGATTG
TTAACATTTTAGGTGAGATGTTAGGAGGTTTGGAGTGATTTGTCTGTCCATGATGGGGGTGGTATCAATCAGATCGTTGT
TTGGTGGTGCGATTGGCTGTATTGGATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis