Browse Element(s) Details


Os.50909.2.S1_s_at

Description gb:AK102002.1
DB_XREF= gi:32987211
TID=Os.50909.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079N03, full insert sequence.
FL= gb:AK102002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5512011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55090Os.11216.1.S1_at3/113+31271345..31278112glycogen/starch/alpha-glucan phosphorylases family protein, expressed
LOC_Os03g55094NANA3+31282257..31282562hypothetical protein
LOC_Os03g55100Os.49313.1.S1_a_at11/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55100OsAffx.23819.2.S1_x_at1/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55110Os.49788.1.S1_at10/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55110Os.49788.2.S1_x_at9/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55120Os.50909.2.S1_s_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55120Os.50909.1.S1_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50909.2.S1_s_at--887--9331Chr03:31298651..31298675 (25 bp)
TCGCCGCGATTCTCAGGATGTTTTA
LOC_Os03g55120
Os.50909.2.S1_s_at--792--6571Chr03:31298644..31298668 (25 bp)
GATTCTCAGGATGTTTTAGCTGCTA
LOC_Os03g55120
Os.50909.2.S1_s_at--734--3471Chr03:31298638..31298662 (25 bp)
CAGGATGTTTTAGCTGCTAGTAGTA
LOC_Os03g55120
Os.50909.2.S1_s_at--104--6951Chr03:31298619..31298643 (25 bp)
GTAGTAGTAGCGTTGTCTGCTGTCT
LOC_Os03g55120
Os.50909.2.S1_s_at--486--1191Chr03:31298614..31298638 (25 bp)
AGTAGCGTTGTCTGCTGTCTTCGTC
LOC_Os03g55120
Os.50909.2.S1_s_at--879--7171Chr03:31298605..31298629 (25 bp)
GTCTGCTGTCTTCGTCTGATTTGGA
LOC_Os03g55120
Os.50909.2.S1_s_at--602--7131Chr03:31298598..31298622 (25 bp)
GTCTTCGTCTGATTTGGAGGTCCTC
LOC_Os03g55120
Os.50909.2.S1_s_at--1000--6491Chr03:31298588..31298612 (25 bp)
GATTTGGAGGTCCTCCCCTGATTTT
LOC_Os03g55120
Os.50909.2.S1_s_at--628--10071Chr03:31298561..31298585 (25 bp)
TAGTGTGTTTGGAACCCTGGAAATT
LOC_Os03g55120
Os.50909.2.S1_s_at--838--3871Chr03:31298545..31298569 (25 bp)
CTGGAAATTTTAGTAGAACCTCGAT
LOC_Os03g55120
Os.50909.2.S1_s_at--318--10331Chr03:31298537..31298561 (25 bp)
TTTAGTAGAACCTCGATTATTAGTG
LOC_Os03g55120
Target Sequence 
TCGCCGCGATTCTCAGGATGTTTTAGCTGCTAGTAGTAGTAGCGTTGTCTGCTGTCTTCGTCTGATTTGGAGGTCCTCCC
CTGATTTTTTTAGTGTGTTTGGAACCCTGGAAATTTTAGTAGAACCTCGATTATTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50909.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis