Browse Element(s) Details


Os.50917.1.S1_at

Description gb:AK059450.1
DB_XREF= gi:32969468
TID=Os.50917.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B03, full insert sequence.
FL= gb:AK059450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4314010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43110NANA6+25907671..25908804retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43120OsAffx.5088.1.S1_at11/116+25917415..25924038expressed protein
LOC_Os06g43120Os.6714.1.S1_a_at2/116+25917415..25924038expressed protein
LOC_Os06g43130Os.51825.1.S1_at11/116+25927040..25929626expressed protein
LOC_Os06g43140Os.50917.1.S1_at10/116+25931445..25933934expressed protein
LOC_Os06g43150NANA6+25935098..25940004retrotransposon protein, putative, unclassified
LOC_Os06g43160OsAffx.28072.1.S1_at11/116+25940643..25942656Exostosin family protein, expressed
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed
LOC_Os06g43180Os.49183.1.S1_at9/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43180OsAffx.28074.1.S1_at1/116+25958474..25962255cyclase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50917.1.S1_at--396--7671Chr06:25931855..25931879 (25 bp)
GGGATAAGAGACGACCTCTCCGAGT
LOC_Os06g43140
Os.50917.1.S1_at--705--5831Chr06:25931867..25931891 (25 bp)
GACCTCTCCGAGTTCAAGTGCGGCA
LOC_Os06g43140
Os.50917.1.S1_at--161--2171Chr06:25932573..25932597 (25 bp)
ACACCAGTGCTTCGTTGACTATCAA
LOC_Os06g43140
Os.50917.1.S1_at--818--3691Chr06:25932604..25932628 (25 bp)
CTATGACTCCGATGTCCAGTTTGAC
LOC_Os06g43140
Os.50917.1.S1_at--388--2511Chr06:25932634..25932658 (25 bp)
AACATTTCTTAGTCGCATTGTCCCA
LOC_Os06g43140
Os.50917.1.S1_at--582--471Chr06:25932754..25932778 (25 bp)
ATCTGCTCCATGGAGGCACACCATA
LOC_Os06g43140
Os.50917.1.S1_at--1113--5311NONE
GAAGGGCCAGACGACATGCCAGCAC
NONE
Os.50917.1.S1_at--627--5771Chr06:25933342..25933363 (22 bp)
GACGATTCCTATCACTGATGGGCGT
LOC_Os06g43140
Os.50917.1.S1_at--1008--6251Chr06:25933355..25933379 (25 bp)
GATGGGCGTCTCAACATGGGAACTT
LOC_Os06g43140
Os.50917.1.S1_at--579--9911Chr06:25933751..25933775 (25 bp)
TACTCCTCGCCAGATTGTGATTACT
LOC_Os06g43140
Os.50917.1.S1_at--323--7411Chr06:25933767..25933791 (25 bp)
GTGATTACTCTCAATGGGATCTAAA
LOC_Os06g43140
Target Sequence 
GGGATAAGAGACGACCTCTCCGAGTTCAAGTGCGGCATGGCACATCTGTTCTTGCAGCACACCAGTGCTTCGTTGACTAT
CAATGAGAACTATGACTCCGATGTCCAGTTTGACACTGAAACATTTCTTAGTCGCATTGTCCCAGAGGGTCCATCTGCTC
CATGGAGGCACACCATAGAAGGGCCAGACGACATGCCAGCACATATTAAATCGTCGATGTTTGGTTGTGCCCTGACGATT
CCTATCACTGATGGGCGTCTCAACATGGGAACTTGGCAGGGTATATGGCTCTGTGNACATCGAGACTACGCTACTCCTCG
CCAGATTGTGATTACTCTCAATGGGATCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis