Browse Element(s) Details


Os.49183.1.S1_at

Description gb:AK108500.1
DB_XREF= gi:32993709
TID=Os.49183.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-H03, full insert sequence.
FL= gb:AK108500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g431809/11cyclase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43140Os.50917.1.S1_at10/116+25931445..25933934expressed protein
LOC_Os06g43150NANA6+25935098..25940004retrotransposon protein, putative, unclassified
LOC_Os06g43160OsAffx.28072.1.S1_at11/116+25940643..25942656Exostosin family protein, expressed
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed
LOC_Os06g43180Os.49183.1.S1_at9/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43180OsAffx.28074.1.S1_at1/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43190Os.25528.1.A1_at11/116+25962878..25966412C2 domain containing protein, expressed
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49183.1.S1_at--932--5591NONE
GAAATTGTAACTGTCGAAGCTCTGA
NONE
Os.49183.1.S1_at--195--8671Chr06:25958729..25958753 (25 bp)
TGTGGAACCTGGCATGTACATGTTA
LOC_Os06g43180
Os.49183.1.S1_at--479--2111Chr06:25958712..25958736 (25 bp)
ACATGTTACATTGCTTACCTCTAAG
LOC_Os06g43180
Os.49183.1.S1_at--910--9971Chr06:25958697..25958721 (25 bp)
TACCTCTAAGGCTGGCTGGAGCTGA
LOC_Os06g43180
Os.49183.1.S1_at--558--3911Chr06:25958682..25958706 (25 bp)
CTGGAGCTGAGGGTTCACCCGTTAG
LOC_Os06g43180
Os.49183.1.S1_at--724--3351Chr06:25958667..25958691 (25 bp)
CACCCGTTAGGTGCATCCTTATAAA
LOC_Os06g43180
Os.49183.1.S1_at--1052--6991Chr06:25958617..25958641 (25 bp)
GTACTGTACCAGCTGAAGAGACCGC
LOC_Os06g43180
Os.49183.1.S1_at--1141--5811Chr06:25958598..25958622 (25 bp)
GACCGCTGTAATGTAGGATTTGGCT
LOC_Os06g43180
Os.49183.1.S1_at--1121--8291Chr06:25958577..25958601 (25 bp)
GGCTTTCAATGATCATGTACCTTCA
LOC_Os06g43180
Os.49183.1.S1_at--427--751Chr06:25958535..25958559 (25 bp)
ATGTACGTGTTCTTTGCTCTTCCAT
LOC_Os06g43180
Os.49183.1.S1_at--626--231Chr06:25958474..25958498 (25 bp)
ATATATCATATCTCTCAAGTGCTGT
NONE
Target Sequence 
GAAATTGTAACTGTCGAAGCTCTGAAGTTAGATGATGTGGAACCTGGCATGTACATGTTACATTGCTTACCTCTAAGGCT
GGCTGGAGCTGAGGGTTCACCCGTTAGGTGCATCCTTATAAAATGATCGCGTCATTGAGGATTTGAGGTACTGTACCAGC
TGAAGAGACCGCTGTAATGTAGGATTTGGCTTTCAATGATCATGTACCTTCAAAACAGTGTTCTTTTTCATGTACGTGTT
CTTTGCTCTTCCATTTCTCTTTATCAATTCAACACTTGTGATTTTTTTATATATATCATATCTCTCAAGTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis