Browse Element(s) Details


Os.25528.1.A1_at

Description gb:AK058988.1
DB_XREF= gi:32969006
TID=Os.25528.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F01, full insert sequence.
FL= gb:AK058988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4319011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43150NANA6+25935098..25940004retrotransposon protein, putative, unclassified
LOC_Os06g43160OsAffx.28072.1.S1_at11/116+25940643..25942656Exostosin family protein, expressed
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed
LOC_Os06g43180Os.49183.1.S1_at9/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43180OsAffx.28074.1.S1_at1/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43190Os.25528.1.A1_at11/116+25962878..25966412C2 domain containing protein, expressed
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25528.1.A1_at--141--6511Chr06:25963320..25963344 (25 bp)
GATATGGCACACTTGGTGGACTGAA
LOC_Os06g43190
Os.25528.1.A1_at--993--171Chr06:25963245..25963269 (25 bp)
ATTTATCCAGGGTATCCAGCCTTCA
LOC_Os06g43190
Os.25528.1.A1_at--510--4351Chr06:25963230..25963254 (25 bp)
CCAGCCTTCATCATCCAGTTAATTG
LOC_Os06g43190
Os.25528.1.A1_at--756--5411Chr06:25963185..25963209 (25 bp)
GAAGCGATTCATGTCAACATCTTAG
LOC_Os06g43190
Os.25528.1.A1_at--1008--291Chr06:25963118..25963142 (25 bp)
ATAGCTTGCAGAATGTCACGAATGG
LOC_Os06g43190
Os.25528.1.A1_at--790--6631Chr06:25963060..25963084 (25 bp)
GTTGTAACAGTGATCCACCTTTGTT
LOC_Os06g43190
Os.25528.1.A1_at--313--9631Chr06:25963024..25963048 (25 bp)
TCATGTTTGGCTGTTCTGTGACTGT
LOC_Os06g43190
Os.25528.1.A1_at--432--7071Chr06:25962969..25962993 (25 bp)
GTAATTCTAGTTCTACCTGCAACTG
LOC_Os06g43190
Os.25528.1.A1_at--186--1771Chr06:25962955..25962979 (25 bp)
ACCTGCAACTGCCTGATAAGTGTTA
LOC_Os06g43190
Os.25528.1.A1_at--967--1231Chr06:25962921..25962945 (25 bp)
AGTTGCAGTAGCTTGTCGACTTTGT
LOC_Os06g43190
Os.25528.1.A1_at--229--7211Chr06:25962907..25962931 (25 bp)
GTCGACTTTGTACCATGTTGTTTGA
LOC_Os06g43190
Target Sequence 
GATATGGCACACTTGGTGGACTGAAGTTGTCCACATACNAAAGCAAGTAAGCAACAAGTGATGATCAGTTCTTATATTTA
TCCAGGGTATCCAGCCTTCATCATCCAGTTAATTGAAACAAATGAAATCATTCNTGAAGCGATTCATGTCAACATCTTAG
CAACCAATGGTAGTAGTTACCATCTGGTATGTATCATATATCATAGCTTGCAGAATGTCACGAATGGAATTTGTTCGATT
ATGTTGTATGTTTTGGGCTTGTTGTAACAGTGATCCACCTTTGTTCTGTTTTGAGGTCATGTTTGGCTGTTCTGTGACTG
TAACTACTGCTTTTTACAAAGGGGGGNAAGCAGTAATTCTAGTTCTACCTGCAACTGCCTGATAAGTGTTAACTGTGAAA
AGTTGCAGTAGCTTGTCGACTTTGTACCATGTTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25528.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis