Browse Element(s) Details


Os.54197.1.S1_at

Description gb:AK102470.1
DB_XREF= gi:32987679
TID=Os.54197.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094G05, full insert sequence.
FL= gb:AK102470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4321011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed
LOC_Os06g43180Os.49183.1.S1_at9/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43180OsAffx.28074.1.S1_at1/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43190Os.25528.1.A1_at11/116+25962878..25966412C2 domain containing protein, expressed
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed
LOC_Os06g43260OsAffx.28077.1.S1_at11/116+25992669..25994758hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54197.1.S1_at--2--4971Chr06:25973339..25973363 (25 bp)
GCATCAAGTTCGTGCACCAGGACTG
LOC_Os06g43210
Os.54197.1.S1_at--974--6851Chr06:25973226..25973250 (25 bp)
GTTTGTCTCGATTCGGCGGTGGAAT
LOC_Os06g43210
Os.54197.1.S1_at--932--711Chr06:25973190..25973214 (25 bp)
ATGATAATCCGGTGCATTTGCTCGA
LOC_Os06g43210
Os.54197.1.S1_at--64--4951Chr06:25973177..25973201 (25 bp)
GCATTTGCTCGATAATTTCTGGTGA
LOC_Os06g43210
Os.54197.1.S1_at--141--9751Chr06:25973120..25973144 (25 bp)
TAATAGGTCAGCATCACTTCGCTCG
LOC_Os06g43210
Os.54197.1.S1_at--285--2131Chr06:25973073..25973097 (25 bp)
ACAGTGATACCTTTTATGGGCGAGA
LOC_Os06g43210
Os.54197.1.S1_at--926--4611Chr06:25973054..25973078 (25 bp)
GCGAGAGAGGTTTCTACGGCTCTAA
LOC_Os06g43210
Os.54197.1.S1_at--226--6871Chr06:25973006..25973030 (25 bp)
GTTTGTGAACCGTACGCTGAGACAT
LOC_Os06g43210
Os.54197.1.S1_at--379--8331Chr06:25972956..25972980 (25 bp)
GGCTGCTAGCTGTATTTATTTGATC
LOC_Os06g43210
Os.54197.1.S1_at--872--6411Chr06:25972935..25972959 (25 bp)
GATCTCGTGGCAACATTAGCTAGTT
LOC_Os06g43210
Os.54197.1.S1_at--982--991Chr06:25972859..25972883 (25 bp)
AGGTTTTCTACCTGTGACTGCAAGA
LOC_Os06g43210
Target Sequence 
GCATCAAGTTCGTGCACCAGGACTGCCTCCTCCAGTGGCTCGACCACAGCAACTCCCGCCAGTGCGAGGTACGGAACCCT
CGGTTCGCTTTTATGGGCCGCGGGGGCCTTGGGGTTTGTCTCGATTCGGCGGTGGAATCGATCGATTGGATGATAATCCG
GTGCATTTGCTCGATAATTTCTGGTGAATTTTTGCGGTGTTGTATGTAGCTGGTGGTTGTAATAGGTCAGCATCACTTCG
CTCGCGCTGGATAGGGGCAAGTGATAACAGTGATACCTTTTATGGGCGAGAGAGGTTTCTACGGCTCTAAGATGATATAA
TTTGTGCAATAGGGTTTGTGAACCGTACGCTGAGACATTGTTTTTATTTAGATTATTTTACAAGGCTGCTAGCTGTATTT
ATTTGATCTCGTGGCAACATTAGCTAGTTTCAGATATTTCTCTACAATCACATTTACAGATGTAAAGCTTAGTATGGACA
AGGTTTTCTACCTGTGACTGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis