Browse Element(s) Details


OsAffx.28077.1.S1_at

Description tigr:9634.m04176
TID=OsAffx.28077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4326011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed
LOC_Os06g43260OsAffx.28077.1.S1_at11/116+25992669..25994758hypothetical protein
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed
LOC_Os06g43280Os.55135.1.S1_at11/116+26006061..26009416elongator component, putative, expressed
LOC_Os06g43290Os.46785.2.S1_x_at4/116+26011705..26015703retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28077.1.S1_at--300--5911Chr06:25994701..25994725 (25 bp)
GAGCTCGAGCTCTATAACCTCCTTG
LOC_Os06g43260
OsAffx.28077.1.S1_at--742--10171Chr06:25994693..25994713 (21 bp)
TATAACCTCCTTGTGCCGGAGCAGC
LOC_Os06g43260
OsAffx.28077.1.S1_at--103--6571Chr06:25993200..25993224 (25 bp)
GATTCTCAAAGAAACCAACCCACCG
LOC_Os06g43260
OsAffx.28077.1.S1_at--1148--7751Chr06:25993161..25993185 (25 bp)
GGTGACGGTGGACACAGCAGCGGCA
LOC_Os06g43260
OsAffx.28077.1.S1_at--1093--8531Chr06:25993126..25993150 (25 bp)
TGGAGCCCAAGCCTGACACCGGCAA
LOC_Os06g43260
OsAffx.28077.1.S1_at--346--8231Chr06:25992743..25993130 (25 bp)
GGCAACCTCAGCGATCTGGATTCTG
LOC_Os06g43260
OsAffx.28077.1.S1_at--1029--1631Chr06:25992734..25993121 (25 bp)
AGCGATCTGGATTCTGCGGTTGGAA
LOC_Os06g43260
OsAffx.28077.1.S1_at--398--6411Chr06:25992731..25992768 (25 bp)
GATCTGGATTCTGCGGTTGGAACCT
LOC_Os06g43260
OsAffx.28077.1.S1_at--472--6571Chr06:25992725..25992749 (25 bp)
GATTCTGCGGTTGGAACCTGCGCAT
LOC_Os06g43260
OsAffx.28077.1.S1_at--268--4691Chr06:25992719..25992743 (25 bp)
GCGGTTGGAACCTGCGCATGCTTCG
LOC_Os06g43260
OsAffx.28077.1.S1_at--145--1771Chr06:25992710..25992734 (25 bp)
ACCTGCGCATGCTTCGCCGTCATGG
LOC_Os06g43260
Target Sequence 
GAGCTCGAGCTCTATAACCTCCTTGTGCCGGAGCAGCAGCAGCAGCGGATTGTCGCCAAGATTCTCAAAGAAACCAACCC
ACCGTCATCGTCGGTGGCGGTGACGGTGGACACAGCAGCGGCAGCGCCGCTCCTGGAGCCCAAGCCTGACACCGGCAACC
TCAGCGATCTGGATTCTGCGGTTGGAACCTGCGCATGCTTCGCCGTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis