Browse Element(s) Details


OsAffx.15906.1.S1_at

Description tigr:9634.m04172
TID=OsAffx.15906.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 133613 AP2 DNA-binding domain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4322011/11Glossy15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43180Os.49183.1.S1_at9/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43180OsAffx.28074.1.S1_at1/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43190Os.25528.1.A1_at11/116+25962878..25966412C2 domain containing protein, expressed
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed
LOC_Os06g43260OsAffx.28077.1.S1_at11/116+25992669..25994758hypothetical protein
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007275biological_processdevelopment
GO:0009408biological_processresponse to heat
GO:0009887biological_processorgan morphogenesis
GO:0009908biological_processflower development
GO:0010093biological_processspecification of floral organ identity
GO:0019953biological_processsexual reproduction
GO:0030154biological_processcell differentiation
GO:0048316biological_processseed development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15906.1.S1_at--521--7891Chr06:25978475..25978499 (25 bp)
GGTTCAGAGGTGTCACCCTGCACAA
LOC_Os06g43220
OsAffx.15906.1.S1_at--677--7971Chr06:25978430..25978454 (25 bp)
GGATCGGCCAGCTCATGGGCAAGAA
LOC_Os06g43220
OsAffx.15906.1.S1_at--412--5331Chr06:25978291..25978312 (22 bp)
GAAGTACGTGTACCTTGGCCTGTAT
LOC_Os06g43220
OsAffx.15906.1.S1_at--57--2691Chr06:25978140..25978164 (25 bp)
AAGCGGCGATCAAGTGCTGTGGCAA
LOC_Os06g43220
OsAffx.15906.1.S1_at--969--8491Chr06:25978121..25978145 (25 bp)
TGGCAAGGAGGCTGTGACCAACTTT
LOC_Os06g43220
OsAffx.15906.1.S1_at--1047--2511Chr06:25978102..25978126 (25 bp)
AACTTTGACACCCAAGCGTACGAGG
LOC_Os06g43220
OsAffx.15906.1.S1_at--1123--5891Chr06:25977742..25978099 (25 bp)
GAGCTCAACCTGCAATCTTGGGATA
LOC_Os06g43220
OsAffx.15906.1.S1_at--1021--10771Chr06:25977711..25977735 (25 bp)
TTGATCTTGAGCTCAGCCTCGGGTG
LOC_Os06g43220
OsAffx.15906.1.S1_at--996--1311Chr06:25977550..25977657 (25 bp)
AGAGGACGAGCCTGACGTTCATGCT
LOC_Os06g43220
OsAffx.15906.1.S1_at--542--1331Chr06:25977490..25977514 (25 bp)
AGAGGAGCATCTGGGCTAGGCCTTC
LOC_Os06g43220
OsAffx.15906.1.S1_at--201--1191Chr06:25977402..25977425 (24 bp)
AGTAGCCGGAACATGCTCCTGATGT
LOC_Os06g43220
Target Sequence 
GGTTCAGAGGTGTCACCCTGCACAAGTGCGGCAAATGGGAGGCCAGGATCGGCCAGCTCATGGGCAAGAAGTACGTGTAC
CTTGGCCTGTATGACACGGAGATGGAGGCTGCCAAGGCTTATGACAAAGCGGCGATCAAGTGCTGTGGCAAGGAGGCTGT
GACCAACTTTGACACCCAAGCGTACGAGGACGAGCTCAACCTGCAATCTTGGGATAGCGAGCTTGATCTTGAGCTCAGCC
TCGGGTGCTCCGGTGGCGAACGGGCCGCCGGCGAGGTCCTCCACTCTGCACCAAGCAACCAGAGGACGAGCCTGACGTTC
ATGCTGCCGGAGGAGGAGGAGATGACCGCCTGCCACCGTCAGAGGAGCATCTGGGCTAGGCCTTCCTTGGCTCCGGCGAT
GCCGGACGGCGGCGCGGTCATCCGCCCTGATCAGCATCAGCATCACCCCAGTAGCCGGAACATGCTCCTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis