Browse Element(s) Details


Os.55480.1.S1_at

Description gb:AK108166.1
DB_XREF= gi:32993375
TID=Os.55480.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55480 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H06, full insert sequence.
FL= gb:AK108166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4325010/11cDNA sequence BC024814, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43190Os.25528.1.A1_at11/116+25962878..25966412C2 domain containing protein, expressed
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed
LOC_Os06g43220OsAffx.15906.1.S1_at11/116+25976004..25979791Glossy15, putative, expressed
LOC_Os06g43230OsAffx.28075.1.S1_at11/116+25983228..25984174hypothetical protein
LOC_Os06g43240NANA6+25987882..25989057transposon protein, putative, unclassified
LOC_Os06g43250Os.55480.1.S1_at10/116+25989416..25992216cDNA sequence BC024814, putative, expressed
LOC_Os06g43260OsAffx.28077.1.S1_at11/116+25992669..25994758hypothetical protein
LOC_Os06g43270Os.18776.1.S1_at11/116+26002185..26006063Protein kinase domain containing protein, expressed
LOC_Os06g43280Os.55135.1.S1_at11/116+26006061..26009416elongator component, putative, expressed
LOC_Os06g43290Os.46785.2.S1_x_at4/116+26011705..26015703retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55480.1.S1_at--470--871Chr06:25991038..25991062 (25 bp)
ATGGCCTCCACCTGTGTTTAAATGT
LOC_Os06g43250
Os.55480.1.S1_at--917--771Chr06:25991059..25991079 (21 bp)
ATGTGATTCATCTGATCCAAGTTCA
LOC_Os06g43250
Os.55480.1.S1_at--307--4851Chr06:25991482..25991506 (25 bp)
GCTACAACACTATTTGCTGCGGATG
LOC_Os06g43250
Os.55480.1.S1_at--28--6411Chr06:25991521..25991545 (25 bp)
GATCTGACTGATCTGTTTTTCAGCA
LOC_Os06g43250
Os.55480.1.S1_at--138--1431Chr06:25991552..25991576 (25 bp)
AGAAACTGATGTCTCATGGTGCTGA
LOC_Os06g43250
Os.55480.1.S1_at--570--2891Chr06:25991692..25991715 (24 bp)
AAGGTATTGTACTTGACCCTGGAGA
LOC_Os06g43250
Os.55480.1.S1_at--392--4391Chr06:25991754..25991778 (25 bp)
GCCAATGGTTACAAGCACTTCCGAA
LOC_Os06g43250
Os.55480.1.S1_at--648--4211Chr06:25991774..25991798 (25 bp)
CCGAAGTTTCTTCACGGTTCAGGAT
LOC_Os06g43250
Os.55480.1.S1_at--1100--5551NONE
GAAAGCGGAGCTCTGGATGATAACT
NONE
Os.55480.1.S1_at--1080--6231Chr06:25991974..25991998 (25 bp)
GATGGACCTTGCAGAGGTTCCTCAG
LOC_Os06g43250
Os.55480.1.S1_at--153--8711Chr06:25992074..25992098 (25 bp)
TGTCTTTTACAGAAATTACCCGCTT
LOC_Os06g43250
Target Sequence 
ATGGCCTCCACCTGTGTTTAAATGTGATTCATCTGATCCAAGTTCAAAATACTTATGGTATACAAGTGAAATCGAGGCGG
CTGAGAAAGCTACAACACTATTTGCTGCGGATGTTATTTACAGTGACGATCTGACTGATCTGTTTTTCAGCATAGCAAAG
AAACTGATGTCTCATGGTGCTGAGAAGGTATTGTACTTGACCCTGGAGAAGAGATATAACTTCAGTATGGACGAACTAGA
TGTTGTAGCCAATGGTTACAAGCACTTCCGAAGTTTCTTCACGGTTCAGGATGAAAGCGGAGCTCTGGATGATAACTCAT
GTAGACCAGATTTTGTTGGAGAGCAGATGGACCTTGCAGAGGTTCCTCAGTACATCAGAGAATATGACAGGGGCAAAGAT
TTGGAGATGTGGAAGATAATGTACAACCCAAATCCAGAATAGCAATGTCTTTTACAGAAATTACCCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis