Browse Element(s) Details


Os.50928.1.S1_at

Description gb:AK059515.1
DB_XREF= gi:32969533
TID=Os.50928.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-029-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B11, full insert sequence.
FL= gb:AK059515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1100011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10960OsAffx.5289.1.S1_at11/117+6013523..6015699expressed protein
LOC_Os07g10970OsAffx.5290.1.S1_at11/117+6017150..6019452expressed protein
LOC_Os07g10979NANA7+6026296..6026941NA
LOC_Os07g10990OsAffx.16205.1.S1_at11/117+6031397..6032250hypothetical protein
LOC_Os07g11000Os.50928.1.S1_at11/117+6034377..6042702expressed protein
LOC_Os07g11010Os.2220.1.S1_at11/117+6049606..6058815Kinase associated protein phosphatase, putative, expressed
LOC_Os07g11020OsAffx.16206.1.S1_at11/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11020Os.52782.1.S1_at1/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50928.1.S1_at--36--8871Chr07:6042122..6042146 (25 bp)
TGATGTGGTCGCACTTCGAGTTCCT
LOC_Os07g11000
Os.50928.1.S1_at--49--8531Chr07:6042158..6042182 (25 bp)
TGGACGGCAAGATCTCCCTCGGCTG
LOC_Os07g11000
Os.50928.1.S1_at--820--491Chr07:6042385..6042409 (25 bp)
ATCGGCGGCGACTGGTGACACTACG
LOC_Os07g11000
Os.50928.1.S1_at--386--2011Chr07:6042404..6042428 (25 bp)
ACTACGCCGGCGATCTGTACATAAC
LOC_Os07g11000
Os.50928.1.S1_at--1071--771Chr07:6042436..6042460 (25 bp)
ATGTGCATGCGTGTGTAGTTGATTT
LOC_Os07g11000
Os.50928.1.S1_at--473--8851Chr07:6042491..6042515 (25 bp)
TGATCGATCGCTAGGCTCGTTGCTC
LOC_Os07g11000
Os.50928.1.S1_at--825--9391Chr07:6042507..6042531 (25 bp)
TCGTTGCTCTCTTTCGCTAATGCTA
LOC_Os07g11000
Os.50928.1.S1_at--634--3671Chr07:6042517..6042541 (25 bp)
CTTTCGCTAATGCTAGTGTCCACTT
LOC_Os07g11000
Os.50928.1.S1_at--226--7431Chr07:6042595..6042618 (24 bp)
GTGTTCTTGAAGAAGCCACCCGTCG
LOC_Os07g11000
Os.50928.1.S1_at--765--4231Chr07:6042326..6042638 (25 bp)
CCGTCGCTATAGGTTATCGCTGTAT
LOC_Os07g11000
Os.50928.1.S1_at--576--3511Chr07:6042643..6042667 (25 bp)
CATGTGTGTCGTGTGTTGCTATAGT
LOC_Os07g11000
Target Sequence 
TGATGTGGTCGCACTTCGAGTTCCTGGCGAGCGCGCTGGACGGCAAGATCTCCCTCGGCTGCGACCTCTCGCTGTGGCGC
GCCTACGTCTCCGGGTTCCTGGGCCTGGTGGTGGAGTGCACGCCGTGCTGGGCGCACGAGGTGGACCTGAGGGTGCTCAG
GAGGCTCAGCGCCGGCCTCCGGCAGTGGAAGGAGGACGAGCTNGCCGTCGCGCTCCTCCGCCGTGCCGGCCCGGAGGCCA
TGGCCGCCGCCGCCGAGCTCATCATCGGCGGCGACTGGTGACACTACGCCGGCGATCTGTACATAACTATTGCNATGTGC
ATGCGTGTGTAGTTGATTTCGATATTGTGGTAGTAATTGATGACTTNGCTGATCGATCGCTAGGCTCGTTGCTCTCTTTC
GCTAATGCTAGTGTCCACTTNTTAGTATATCTTGGAAGGAAGGAAACTGCTCAATATATGTGTGTTAAAAATGGTGTTCT
TGAAGAAGCCACCCGTCGCTATAGGTTATCGCTGTATCTAACATGTGTGTCGTGTGTTGCTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis