Browse Element(s) Details


Os.50938.1.S1_at

Description gb:AK103181.1
DB_XREF= gi:32988390
TID=Os.50938.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121I24, full insert sequence.
FL= gb:AK059577.1 gb:AK103181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0419011/11Auxin Efflux Carrier family protein, expressed
LOC_Os12g0400010/11Auxin efflux carrier component 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04190Os.50938.1.S1_at11/1111+1701229..1704478Auxin Efflux Carrier family protein, expressed
LOC_Os11g04200Os.54231.1.S1_at4/1111+1706762..1711766Mpp10 protein, expressed
LOC_Os11g04210Os.17868.1.S1_at10/1111+1714057..1717595Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os11g04220Os.27960.1.S1_a_at10/1111+1717965..1734148HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0009606biological_processtropism
GO:0009630biological_processgravitropism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009942biological_processlongitudinal axis specification
GO:0009958biological_processpositive gravitropism
GO:0010082biological_processregulation of root meristem size
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009925cellular_componentbasal plasma membrane
GO:0012506cellular_componentvesicle membrane
GO:0016020cellular_componentmembrane
GO:0016328cellular_componentlateral plasma membrane
GO:0045177cellular_componentapical part of cell
GO:0005215molecular_functiontransporter activity
GO:0009672molecular_functionauxin:hydrogen symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50938.1.S1_at--1086--6733Chr12:1657925..1657949 (25 bp)
GTTCATCCTAACATTCTGAGCACAG
LOC_Os12g04000
Os.50938.1.S1_at--471--112Chr12:1657591..1657937 (25 bp)
ATTCTGAGCACAGCCGTGATATTCG
LOC_Os12g04000
Os.50938.1.S1_at--471--3612Chr12:1657542..1657566 (25 bp)
CATTGGTCTACTACATACTGCTGGG
LOC_Os12g04000
Os.50938.1.S1_at--986--8992Chr12:1657513..1657537 (25 bp)
TGAAGAGCTCTCCAAGTCTCAACTC
LOC_Os12g04000
Os.50938.1.S1_at--21--1172Chr12:1657499..1657523 (25 bp)
AGTCTCAACTCAACTGTGCAAGAAC
LOC_Os12g04000
Os.50938.1.S1_at--655--10351Chr11:1701488..1701512 (25 bp)
TTTATGGTTCTGTTTTAGTTGCTCA
LOC_Os11g04190
Os.50938.1.S1_at--639--712Chr12:1657411..1657435 (25 bp)
ATGATAGGTCAGCTTAGTGATGCTA
LOC_Os12g04000
Os.50938.1.S1_at--1102--10172Chr12:1657364..1657388 (25 bp)
TTTGGGTTCAAGTGACGGCCAGCCA
LOC_Os12g04000
Os.50938.1.S1_at--51--8452Chr12:1657348..1657372 (25 bp)
GGCCAGCCACGGTTTCTGATTGAAG
LOC_Os12g04000
Os.50938.1.S1_at--361--953Chr11:17385789..17385809 (21 bp)
AGGAACATAGACATCACATTAGTGA
NONE
Os.50938.1.S1_at--469--5312Chr12:1657266..1657290 (25 bp)
GAAGGTCTGTTTCAAATTACTGACA
LOC_Os12g04000
Target Sequence 
GTTCATCCTAACATTCTGAGCACAGCCGTGATATTCGGGATGCTGATNGCTCTCCCCATCACATTGGTCTACTACATACT
GCTGGGGCTCTGAAGAGCTCTCCAAGTCTCAACTCAACTGTGCAAGAACTTGATGTTACTGACAGTTTGATTAGGATTTA
TGGTTCTGTTTTAGTTGCTCAGATTTTGTTTGGATGATAGGTCAGCTTAGTGATGCTAGNTNGACAATTATCCGAGNACT
TTTGGGTTCAAGTGACGGCCAGCCACGGTTTCTGATTGAAGATTAGGAACATAGACATCACATTAGTGANAACAGGCATC
NAATTTGTAAGACATTGAGAAGGTCTGTTTCAAATTACTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis