Browse Element(s) Details


Os.50940.1.S1_a_at

Description gb:AK059593.1
DB_XREF= gi:32969611
TID=Os.50940.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147E20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D05, full insert sequence.
FL= gb:AK059593.1 gb:AK103816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0544011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05450OsAffx.28290.2.S1_at10/117+2507589..2508971Sulfotransferase domain containing protein
LOC_Os07g05460OsAffx.28290.1.S1_at11/117+2515614..2517343Sulfotransferase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50940.1.S1_a_at--235--5911Chr07:2505489..2505513 (25 bp)
GAGCAGTGGCTTATCGACTACGATT
LOC_Os07g05440
Os.50940.1.S1_a_at--892--9931Chr07:2505507..2505531 (25 bp)
TACGATTGCCGGATGATTGCTCGAT
LOC_Os07g05440
Os.50940.1.S1_a_at--491--2651Chr07:2505577..2505601 (25 bp)
AACCACTGCGACTGATGTTCGTGCT
LOC_Os07g05440
Os.50940.1.S1_a_at--410--1051Chr07:2505624..2505648 (25 bp)
AGGTGGTTCCTGTTCAAGTTCTCGC
LOC_Os07g05440
Os.50940.1.S1_a_at--1116--3791Chr07:2505644..2505668 (25 bp)
CTCGCCCGGCGAGTTTCGAAGAAAG
LOC_Os07g05440
Os.50940.1.S1_a_at--966--1151Chr07:2505688..2505712 (25 bp)
AGTCTTGGTTCGTTGGACAGGTCAA
LOC_Os07g05440
Os.50940.1.S1_a_at--708--4851Chr07:2505725..2505749 (25 bp)
GCTACCTGGGAAGATGCTGCGGCTT
LOC_Os07g05440
Os.50940.1.S1_a_at--1029--10271Chr07:2505748..2505772 (25 bp)
TTTGCGTCTTCGATTTCCGGATGCG
LOC_Os07g05440
Os.50940.1.S1_a_at--1064--5272Chr07:2505808..2505832 (25 bp)
GAATGTTACGGGTGCTGCTACTGTA
LOC_Os07g05440
Os.50940.1.S1_a_at--744--5292Chr07:2505891..2505915 (25 bp)
GAAGGCCGAATGTCCGAGTCTCTGG
LOC_Os07g05440
Os.50940.1.S1_a_at--1120--871Chr07:2505930..2505954 (25 bp)
AGGCCAGCTGTATGCCGTGCATGTA
LOC_Os07g05440
Target Sequence 
GAGCAGTGGCTTATCGACTACGATTGCCGGATGATTGCTCGATTCNTCCCGTTGTTCATGTCTCCCAACTTCGACAAGCT
GTGGCACCAACCACTGCGACTGATGTTCGTGCTCTTCCTACCATGGCACCAGAGGAGGTGGTTCCTGTTCAAGTTCTCGC
CCGGCGAGTTTCGAAGAAAGGAGCTGGAGCTGTGGAACAAGTCTTGGTTCGTTGGACAGGTCAATCATCAAGTGAGGCTA
CCTGGGAAGATGCTGCGGCTTTGCGTCTTCGATTTCCGGATGCGCCGGCTTGGGGGCAAGCCGCTTTCGAAGGGGNAAGG
AATGTTACGGGTGCTGCTACTGTATCTGAACCGGTAAGGGAGAATAATCCTGTGAAGTCTGGGAAACGACCTCAAAGGGA
GAGAAGGCCGAATGTCCGAGTCTCTGGGCCGGAGTGGTCTTAGGCCAGCTGTATGCCGTGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50940.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis