Browse Element(s) Details


Os.51018.1.S1_at

Description gb:AK068320.1
DB_XREF= gi:32978338
TID=Os.51018.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51018 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013150F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150F08, full insert sequence.
FL= gb:AK060192.1 gb:AK068320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4145011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41420Os.56924.1.S1_at11/115+24171422..24173706nodulin, putative, expressed
LOC_Os05g41430OsAffx.27284.1.S1_at2/115+24177048..24179113hypothetical protein
LOC_Os05g41440Os.5391.1.S1_at11/115+24187878..24191966Cytochrome P450 98A1, putative, expressed
LOC_Os05g41450Os.51018.1.S1_at11/115+24192758..24197089Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g41460Os.7892.1.S1_a_at10/115+24197246..24198517Cysteine proteinase inhibitor-II, putative, expressed
LOC_Os05g41470OsAffx.15059.1.S1_at11/115+24199172..24199603hypothetical protein
LOC_Os05g41480Os.11883.1.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41480Os.11883.2.S1_at11/115+24204369..24206411phosphate translocator, putative, expressed
LOC_Os05g41490Os.55479.1.S1_at11/115+24208524..24209648circadian clock coupling factor ZGT, putative, expressed
LOC_Os05g41500NANA5+24215073..24215576hypothetical protein
LOC_Os05g41510Os.52922.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed
LOC_Os05g41510Os.9185.1.S1_at11/115+24218139..24226631glycine-rich protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51018.1.S1_at--947--6191Chr05:24196555..24196579 (25 bp)
GAGGCTACCCCATTAAGCAACGCAA
LOC_Os05g41450
Os.51018.1.S1_at--350--711Chr05:24196628..24196652 (25 bp)
ATGATGAGGGTTCAGCTCCACTGGA
LOC_Os05g41450
Os.51018.1.S1_at--842--7731Chr05:24196678..24196702 (25 bp)
GGTGTGGTTACAACCTCTTCAGGAC
LOC_Os05g41450
Os.51018.1.S1_at--138--9571Chr05:24196693..24196717 (25 bp)
TCTTCAGGACCACTTGTTTCGGAGG
LOC_Os05g41450
Os.51018.1.S1_at--141--8231Chr05:24196754..24196778 (25 bp)
GGCAATTGCCTGAGCTGACCAAGAT
LOC_Os05g41450
Os.51018.1.S1_at--1051--831Chr05:24196783..24196807 (25 bp)
ATGGACCCTGTTCAGTTTGCCTTGT
LOC_Os05g41450
Os.51018.1.S1_at--357--10291Chr05:24196798..24196822 (25 bp)
TTTGCCTTGTCTTCAAACCATAGGT
LOC_Os05g41450
Os.51018.1.S1_at--604--1411Chr05:24196851..24196875 (25 bp)
AGAATGATAACTTGCCCCTTTTAGG
LOC_Os05g41450
Os.51018.1.S1_at--746--7151Chr05:24196906..24196930 (25 bp)
GTCTATTGTACATCCTTGTAGCCCA
LOC_Os05g41450
Os.51018.1.S1_at--1108--9791Chr05:24196934..24196958 (25 bp)
TAACTCTGTAGCTGATCTTGTATAA
LOC_Os05g41450
Os.51018.1.S1_at--119--1251Chr05:24197049..24197073 (25 bp)
AGTTGTACATCCTATCTGATCTCCA
LOC_Os05g41450
Target Sequence 
GAGGCTACCCCATTAAGCAACGCAAGAGCTTCTCTAAGGAACATTGACTTAAACATAGAGCTTACTGACTATGATGATGA
GGGTTCAGCTCCACTGGAGGTCCAGCCTCCAGCTCCGGCAGCAGGTGTGGTTACAACCTCTTCAGGACCACTTGTTTCGG
AGGTGAACGAAGAGGCGAAGACCAAAGACTTTCTAGGATGGCAATTGCCTGAGCTGACCAAGATGGCCATGGACCCTGTT
CAGTTTGCCTTGTCTTCAAACCATAGGTTAGAGGAGGATGAGGATTATGACAACGAAGAATGATAACTTGCCCCTTTTAG
GTTAAGAAGCTGATAGATAGACATGACTTTTGTCTATTGTACATCCTTGTAGCCCAGCTTAACTCTGTAGCTGATCTTGT
ATAATATGTGTACCTGCTGAAGCTGCAGTAGTTTAGGATGTTACAGAGGTTTATCGATCGATAGCTAGCAACTATGTTGA
CAGACAGATTCATCAGTTGTACATCCTATCTGATCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis