Browse Element(s) Details


Os.51079.1.S1_at

Description gb:AK060562.1
DB_XREF= gi:32970580
TID=Os.51079.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G05, full insert sequence.
FL= gb:AK060562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2475011/11Xyloglucan fucosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24720NANA8+14820231..14823117retrotransposon protein, putative, unclassified
LOC_Os08g24730NANA8+14824144..14830245retrotransposon protein, putative, unclassified
LOC_Os08g24740NANA8+14837851..14838484hypothetical protein
LOC_Os08g24750Os.51079.1.S1_at11/118+14843164..14845089Xyloglucan fucosyltransferase family protein, expressed
LOC_Os08g24760Os.19048.1.S1_s_at11/118+14848609..14859237Pre-mRNA splicing factor RNA helicase, putative, expressed
LOC_Os08g24770OsAffx.29332.1.S1_at2/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24770OsAffx.10096.1.S1_x_at1/118+14864723..14865943Legume lectins beta domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51079.1.S1_at--641--5771Chr08:14844526..14844550 (25 bp)
GACGATCTTGCCACGGCGTACGACA
LOC_Os08g24750
Os.51079.1.S1_at--523--2531Chr08:14844580..14844604 (25 bp)
AACTACTCGGCCATCCTGATCGCGT
LOC_Os08g24750
Os.51079.1.S1_at--371--6991Chr08:14844609..14844633 (25 bp)
GTACCCGGACTACTACGAGAGGATC
LOC_Os08g24750
Os.51079.1.S1_at--111--9911Chr08:14844619..14844643 (25 bp)
TACTACGAGAGGATCCGGGCGACGT
LOC_Os08g24750
Os.51079.1.S1_at--454--5011Chr08:14844708..14844732 (25 bp)
GCAGGCGACGCAGAGGCTGTTCCAC
LOC_Os08g24750
Os.51079.1.S1_at--224--5911Chr08:14844778..14844802 (25 bp)
GAGCTCGTCACGTCCGGGATGTCGA
LOC_Os08g24750
Os.51079.1.S1_at--52--8471Chr08:14844989..14845013 (25 bp)
TGGCCCGGCACGTCAAGGTCTGCGA
LOC_Os08g24750
Os.51079.1.S1_at--398--3211Chr08:14845002..14845026 (25 bp)
CAAGGTCTGCGAGGACTTTGATAGA
LOC_Os08g24750
Os.51079.1.S1_at--868--6811Chr08:14845035..14845059 (25 bp)
GTTTTTCGATTGATCACGTTCTCTC
LOC_Os08g24750
Os.51079.1.S1_at--955--6431Chr08:14845046..14845070 (25 bp)
GATCACGTTCTCTCATTGAATTTTG
LOC_Os08g24750
Os.51079.1.S1_at--223--171Chr08:14845065..14845089 (25 bp)
ATTTTGAGTCGATAGCTGGTTCTTG
LOC_Os08g24750
Target Sequence 
GACGATCTTGCCACGGCGTACGACAGCAACAGCAGCAATGGCAGCGGTGGCGGCAACTACTCGGCCATCCTGATCGCGTC
GCTGTACCCGGACTACTACGAGAGGATCCGGGCGACGTACTACGAGCACGCGACGAGGGGAAGGGTGAGGGTGGGGGTGT
TCCAGCCGACGCACGAGGAGAGGCAGGCGACGCAGAGGCTGTTCCACAACCAGAAGGCGCTGGCGGAGATCCTCCTGCTG
GGGTTCTCCGACGAGCTCGTCACGTCCGGGATGTCGACGTTCGGGTACGTGGGCAGCAGCCTCGCGGGCGTGCGGCCGAC
GATCCTGATGCCCGCGCACGGCCACAGGGTCCCCGCGCCGCCGTGCCGGCGAGCCGTGTCCATGGAGCCGTGCAACCTCA
CGCCGCCGCGGGTGGGCGAGGCGGAGTGCCGGGAGATGGCCGCCGTCGTCGACAAGGAGGACGTGGCCCGGCACGTCAAG
GTCTGCGAGGACTTTGATAGAGGGGTGAAGTTTTTCGATTGATCACGTTCTCTCATTGAATTTTGAGTCGATAGCTGGTT
CTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis