Browse Element(s) Details


Os.19048.1.S1_s_at

Description gb:CF330163
DB_XREF= gi:33808555
DB_XREF=NACL--05-M09.g1
CLONE=NACL--05-M09
TID=Os.19048.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19048 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_174527.1 (A.thaliana) RNA helicase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2476011/11Pre-mRNA splicing factor RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24730NANA8+14824144..14830245retrotransposon protein, putative, unclassified
LOC_Os08g24740NANA8+14837851..14838484hypothetical protein
LOC_Os08g24750Os.51079.1.S1_at11/118+14843164..14845089Xyloglucan fucosyltransferase family protein, expressed
LOC_Os08g24760Os.19048.1.S1_s_at11/118+14848609..14859237Pre-mRNA splicing factor RNA helicase, putative, expressed
LOC_Os08g24770OsAffx.29332.1.S1_at2/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24770OsAffx.10096.1.S1_x_at1/118+14864723..14865943Legume lectins beta domain containing protein, expressed
LOC_Os08g24780OsAffx.13811.1.S1_at1/118+14870386..14873620Protein kinase domain containing protein
LOC_Os08g24790Os.15250.1.S1_at11/118+14875922..14876851membrane protein, putative, expressed
LOC_Os08g24800OsAffx.17134.1.S1_at10/118+14878319..14879689hypothetical protein
LOC_Os08g24810OsAffx.17135.1.S1_at11/118+14881776..14883404hypothetical protein
LOC_Os08g24820OsAffx.29333.1.S1_at11/118+14884090..14884524hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19048.1.S1_s_at--604--7871Chr08:14849473..14849497 (25 bp)
GGTTTCTTCCATCATTCTTCACGGT
LOC_Os08g24760
Os.19048.1.S1_s_at--967--7931Chr08:14849278..14849407 (25 bp)
GGATTAGCACAGGTACTTCCTCGAT
LOC_Os08g24760
Os.19048.1.S1_s_at--199--8351Chr08:14849095..14849119 (25 bp)
GGCTGGTAGAAATAGCGCCACACTA
LOC_Os08g24760
Os.19048.1.S1_s_at--1119--2751Chr08:14848962..14849083 (25 bp)
AAGACGTTGACGACACTGGGACTAA
LOC_Os08g24760
Os.19048.1.S1_s_at--654--951Chr08:14848919..14848943 (25 bp)
AGGACGAGCTGCATTGTAACCACCC
LOC_Os08g24760
Os.19048.1.S1_s_at--207--7031Chr08:14848834..14848858 (25 bp)
GTACATAGCTCCTCTTTTAGTTCTT
LOC_Os08g24760
Os.19048.1.S1_s_at--818--10551Chr08:14848814..14848838 (25 bp)
TTCTTAGGTATTGATCCCTGCCTCA
LOC_Os08g24760
Os.19048.1.S1_s_at--617--4451Chr08:14848795..14848819 (25 bp)
GCCTCATCTCGATTAGCAGTCAATT
LOC_Os08g24760
Os.19048.1.S1_s_at--778--7071Chr08:14848777..14848801 (25 bp)
GTCAATTGTCGATTACGCGGGCATA
LOC_Os08g24760
Os.19048.1.S1_s_at--227--7311Chr08:14848739..14848763 (25 bp)
GTGCTGGCATGTACACGGCTGTAAT
LOC_Os08g24760
Os.19048.1.S1_s_at--1050--6271Chr08:14848688..14848712 (25 bp)
GATGTAGATACTGCACAACCTGATG
LOC_Os08g24760
Target Sequence 
GGTTTCTTCCATCATTCTTCACGGTNNCAGAAGAATGGTTCATATAGAACTGTTAAGAACCCTCAAACTGTATTTATTCA
TCCTAGTTCTGGATTAGCACAGGTACTTCCTCGATGGGTAATATACCATGAATTAGTCCTTACAACAAAAGAATATATGC
GTCAGGTAACGGAACTGAAGCCCGACTGGCTGGTAGAAATAGCGCCACACTATTATCAACTAAAAGACGTTGACGACACT
GGGACTAAGAAGCTGCCTAAGGGCCAAGGACGAGCTGCATTGTAACCACCCCCTGTGATCGAAGGTTTTTATCTTAAAAG
ATTCAGAGCCTAGATGGCATAGAGTGAAAATGTACATAGCTCCTCTTTTAGTTCTTAGGTATTGATCCCTGCCTCATCTC
GATTAGCAGTCAATTGTCGATTACGCGGGCATATATTTCGAGAGACGTGCTGGCATGTACACGGCTGTAATTTGTATCAG
CTTTGTGTTGATGTAGAGATGTAGATACTGCACAACCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19048.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis