Browse Element(s) Details


Os.51080.1.S1_at

Description gb:AK060563.1
DB_XREF= gi:32970581
TID=Os.51080.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G09, full insert sequence.
FL= gb:AK060563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1915010/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19110Os.48232.1.S1_at11/115+11066962..11069719expressed protein
LOC_Os05g19120OsAffx.4376.1.S1_at11/115+11072064..11072924hypothetical protein
LOC_Os05g19130OsAffx.26951.1.S1_at11/115+11076712..11077358hypothetical protein
LOC_Os05g19140NANA5+11082909..11089631retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19150Os.51080.1.S1_at10/115+11093852..11095635hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g19160NANA5+11097968..11101195transposon protein, putative, unclassified
LOC_Os05g19170NANA5+11101836..11104946transposon protein, putative, unclassified
LOC_Os05g19180NANA5+11107854..11109907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19190NANA5+11113114..11119426retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004301molecular_functionepoxide hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51080.1.S1_at--867--5331Chr05:11094881..11094905 (25 bp)
GAAGTTCTTGGCTTACCGGACTCCT
LOC_Os05g19150
Os.51080.1.S1_at--796--6171Chr05:11094784..11094808 (25 bp)
GAGGAGGACATCAAGTACTACGCGA
LOC_Os05g19150
Os.51080.1.S1_at--703--7011Chr05:11094770..11094794 (25 bp)
GTACTACGCGAGCAAGTTCGACAAG
LOC_Os05g19150
Os.51080.1.S1_at--327--5611Chr05:11094751..11094775 (25 bp)
GACAAGACTAATTTCACCGGAGGAT
LOC_Os05g19150
Os.51080.1.S1_at--1009--771NONE
ATGGGAACTAACAGCACCCTGGACT
NONE
Os.51080.1.S1_at--639--5091Chr05:11094217..11094241 (25 bp)
GCACCCTGGACTGGAGCTGAGATAA
LOC_Os05g19150
Os.51080.1.S1_at--865--5671Chr05:11094155..11094179 (25 bp)
GACATATCATACTCCAGGCATTCAG
LOC_Os05g19150
Os.51080.1.S1_at--415--751Chr05:11094099..11094123 (25 bp)
ATGTACCGCTGCTGGATGATGTCGT
LOC_Os05g19150
Os.51080.1.S1_at--508--8591Chr05:11094075..11094099 (25 bp)
TGGTCATGAAGGGTGTCGGCCACTT
LOC_Os05g19150
Os.51080.1.S1_at--799--731Chr05:11093933..11093957 (25 bp)
ATGTATTCTTGCGTGCGAACCGTAA
LOC_Os05g19150
Os.51080.1.S1_at--919--4491Chr05:11093877..11093901 (25 bp)
GCGCGTAATGCTCATGAATTGGTGC
LOC_Os05g19150
Target Sequence 
GAAGTTCTTGGCTTACCGGACTCCTGGCCCGCTGATGATGCCAAAGAGCGGGTGGGGGTCGCCGGACGACGAGGTGCCAT
TGCCGAGCTGGATAACAGAGGAGGACATCAAGTACTACGCGAGCAAGTTCGACAAGACTAATTTCACCGGAGGATTGAAC
TACTACCGCGCCCTCAACAAGACATGGGAACTAACAGCACCCTGGACTGGAGCTGAGATAAAGGTGCCAGTGAAGTTCAT
TGTTGGAGACTTGGATTTGACATATCATACTCCAGGCATTCAGGATTTTATTCACAAAGGTGGCTTCAAAAAGTATGTAC
CGCTGCTGGATGATGTCGTGGTCATGAAGGGTGTCGGCCACTTCATCAGTGAAGAAAAGCCAAAGGAAGTTAGTGAGCAT
GTAATCAGCTTCATAAGAAAGTTATCGGCTGAAATGTGATTATTCATCATGAAATTCAGAGTGAGATAAAAATAATTGCA
ATGTATTCTTGCGTGCGAACCGTAAAGTATGTTAGCTTGCATTTGGAGGATGTGGGGCGCGTAATGCTCATGAATTGGTG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis