Browse Element(s) Details


Os.48232.1.S1_at

Description gb:AK066374.1
DB_XREF= gi:32976392
TID=Os.48232.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060C14, full insert sequence.
FL= gb:AK066374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1911011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19060OsAffx.14433.1.S1_at1/115+11043698..11045244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19080Os.53479.1.S1_x_at1/115+11052502..11055364hypothetical protein
LOC_Os05g19090OsAffx.10632.1.S1_at1/115+11056119..11058875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19100OsAffx.21161.1.S1_at1/115+11059303..11062395retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g19110Os.48232.1.S1_at11/115+11066962..11069719expressed protein
LOC_Os05g19120OsAffx.4376.1.S1_at11/115+11072064..11072924hypothetical protein
LOC_Os05g19130OsAffx.26951.1.S1_at11/115+11076712..11077358hypothetical protein
LOC_Os05g19140NANA5+11082909..11089631retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19150Os.51080.1.S1_at10/115+11093852..11095635hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48232.1.S1_at--1109--3291Chr05:11068469..11068493 (25 bp)
CAAATTGTGGTTCTGCTGATAAGCA
LOC_Os05g19110
Os.48232.1.S1_at--786--9791Chr05:11068488..11068512 (25 bp)
TAAGCATCAGACTATACAGGTGTTG
LOC_Os05g19110
Os.48232.1.S1_at--554--3471Chr05:11068504..11068528 (25 bp)
CAGGTGTTGCCTGTTTGTTTAGCAA
LOC_Os05g19110
Os.48232.1.S1_at--163--6891Chr05:11068616..11068746 (25 bp)
GTATTTCAGAGGGAGCTCCACATGG
LOC_Os05g19110
Os.48232.1.S1_at--7--8191Chr05:11068751..11068775 (25 bp)
GGAATGCCACTTGTTAGGTCCCCAG
LOC_Os05g19110
Os.48232.1.S1_at--39--9611Chr05:11069397..11069421 (25 bp)
TCATGGGTGGAACTTTGGGACAACA
LOC_Os05g19110
Os.48232.1.S1_at--116--10051Chr05:11069430..11069454 (25 bp)
TAGATGCTCATCCTAATCCTGTGTT
LOC_Os05g19110
Os.48232.1.S1_at--31--10071Chr05:11069504..11069528 (25 bp)
TAGTGAGGCTGTTTGTTTTGTTGGA
LOC_Os05g19110
Os.48232.1.S1_at--370--6591Chr05:11069548..11069572 (25 bp)
GATTGCCTGATTAGTTTTTGACATG
LOC_Os05g19110
Os.48232.1.S1_at--112--6631Chr05:11069572..11069596 (25 bp)
GTTGTGGTTCATTGGCTTTTTCTTT
LOC_Os05g19110
Os.48232.1.S1_at--667--1611Chr05:11069600..11069624 (25 bp)
AGCTGAGTGCTATTCTTTCTCAAGA
LOC_Os05g19110
Target Sequence 
CAAATTGTGGTTCTGCTGATAAGCATCAGACTATACAGGTGTTGCCTGTTTGTTTAGCAAATGGAGATAACATTGATGAT
GTTGCTTCATTGGGGAGTTCAATTTGTGAAGACGTTGAAGATAAAGACAACAAAAGTAATGCTAATTGTATTTCAGAGGG
AGCTCCACATGGAAACGGAATGCCACTTGTTAGGTCCCCAGCATCATGGTGGAATTTATGTGGAGTTATTGATGTGTTTG
CTGGATGTAAAGATTGAATTGAGATGTTGGCAGGTCATGGGTGGAACTTTGGGACAACAGAAAACTTTAGATGCTCATCC
TAATCCTGTGTTGACAATGAAGAAGTATTTGACAGTTTGGATTGAGGTATTGAATTGTTTATAGTGAGGCTGTTTGTTTT
GTTGGATGTATATATTTTTTTGTTAGATTGCCTGATTAGTTTTTGACATGTTGTGGTTCATTGGCTTTTTCTTTAAAAGC
TGAGTGCTATTCTTTCTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis