Browse Element(s) Details


OsAffx.4376.1.S1_at

Description tigr:9633.m01728
TID=OsAffx.4376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1912011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19080Os.53479.1.S1_x_at1/115+11052502..11055364hypothetical protein
LOC_Os05g19090OsAffx.10632.1.S1_at1/115+11056119..11058875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19100OsAffx.21161.1.S1_at1/115+11059303..11062395retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g19110Os.48232.1.S1_at11/115+11066962..11069719expressed protein
LOC_Os05g19120OsAffx.4376.1.S1_at11/115+11072064..11072924hypothetical protein
LOC_Os05g19130OsAffx.26951.1.S1_at11/115+11076712..11077358hypothetical protein
LOC_Os05g19140NANA5+11082909..11089631retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19150Os.51080.1.S1_at10/115+11093852..11095635hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4376.1.S1_at--1155--5871Chr05:11072115..11072139 (25 bp)
GAGCGAGACGGTGTTCACAGACTCC
LOC_Os05g19120
OsAffx.4376.1.S1_at--807--7411Chr05:11072125..11072149 (25 bp)
GTGTTCACAGACTCCGTCGACGGGA
LOC_Os05g19120
OsAffx.4376.1.S1_at--940--9213Chr05:11072173..11072197 (25 bp)
TCCACCGACGAGTGGCCGGTGACGA
LOC_Os05g19120
OsAffx.4376.1.S1_at--1006--7751Chr05:11072190..11072214 (25 bp)
GGTGACGATGTCACCGCCCAGGCGC
LOC_Os05g19120
OsAffx.4376.1.S1_at--514--7713Chr05:11072673..11072697 (25 bp)
GGGTGATCTGGCCCATCATGATGCT
LOC_Os05g19120
OsAffx.4376.1.S1_at--1038--4873Chr05:11072795..11072819 (25 bp)
GCTATTTTCCCTCCTCCCATGGTTT
LOC_Os05g19120
OsAffx.4376.1.S1_at--236--832Chr05:11072813..11072837 (25 bp)
ATGGTTTTCTGCTCGCTCTGTTTTG
LOC_Os05g19120
OsAffx.4376.1.S1_at--10--9112Chr05:11072822..11072846 (25 bp)
TGCTCGCTCTGTTTTGAGTCAGCGT
LOC_Os05g19120
OsAffx.4376.1.S1_at--1098--3852Chr05:11072830..11072854 (25 bp)
CTGTTTTGAGTCAGCGTGGCCGCGA
LOC_Os05g19120
OsAffx.4376.1.S1_at--999--4652Chr05:11072843..11072867 (25 bp)
GCGTGGCCGCGATTTGTTCGGTCAA
LOC_Os05g19120
OsAffx.4376.1.S1_at--297--4531Chr05:11072848..11072872 (25 bp)
GCCGCGATTTGTTCGGTCAAGTGGT
LOC_Os05g19120
Target Sequence 
GAGCGAGACGGTGTTCACAGACTCCGTCGACGGGAGCAGCTCCAGCTCTGGCGCCGCATCCACCGACGAGTGGCCGGTGA
CGATGTCACCGCCCAGGCGCCCATGAAGACGCGGCGGAAAGCGGCGCTGCCGCCATCGCCGTGGGGTGATCTGGCCCATC
ATGATGCTGCCGTGGTGCCGGGGAAGGTGCTATTTTCCCTCCTCCCATGGTTTTCTGCTCGCTCTGTTTTGAGTCAGCGT
GGCCGCGATTTGTTCGGTCAAGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis