Browse Element(s) Details


Os.51132.1.S1_at

Description gb:AK061061.1
DB_XREF= gi:32971079
TID=Os.51132.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A02, full insert sequence.
FL= gb:AK061061.1 gb:AK071197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07010OsAffx.16865.1.S1_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07010OsAffx.16865.1.S1_x_at11/118+3922402..3927219ABC-2 type transporter family protein, expressed
LOC_Os08g07020OsAffx.29071.1.S1_at11/118+3930047..3930877hypothetical protein
LOC_Os08g07030OsAffx.16866.1.S1_at11/118+3933836..3934069hypothetical protein
LOC_Os08g07040OsAffx.16867.1.S1_at11/118+3934777..3938452expressed protein
LOC_Os08g07050NANA8+3939587..3940141hypothetical protein
LOC_Os08g07060Os.51132.1.S1_at11/118+3942695..3944788expressed protein
LOC_Os08g07070OsAffx.5729.1.S1_at11/118+3945013..3945976expressed protein
LOC_Os08g07080Os.26820.1.A1_s_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07080Os.26820.1.A1_at11/118+3954152..3959294Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g07090OsAffx.5731.1.S1_at10/118+3960134..3963366hypothetical protein
LOC_Os08g07090OsAffx.22759.2.S1_at1/118+3960134..3963366hypothetical protein
LOC_Os08g07100Os.26849.1.S1_at9/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os08g07100Os.26820.1.A1_s_at2/118+3965901..3970988Terpene synthase, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51132.1.S1_at--97--7371Chr08:3944110..3944134 (25 bp)
GTGAACTTGCCAGATATGCCGCAAT
LOC_Os08g07060
Os.51132.1.S1_at--598--3511Chr08:3944263..3944287 (25 bp)
CATGAGGCTTGGTGTGGTCTTCAAC
LOC_Os08g07060
Os.51132.1.S1_at--158--2371Chr08:3944363..3944387 (25 bp)
AAACCTGGACTCAAGACGGCTGACA
LOC_Os08g07060
Os.51132.1.S1_at--819--8431Chr08:3944389..3944413 (25 bp)
GGCCAGGATGCTTGGTTTCGGTATA
LOC_Os08g07060
Os.51132.1.S1_at--988--5331Chr08:3944440..3944464 (25 bp)
GAAGTATCCTGCTGGTCCTTCATGA
LOC_Os08g07060
Os.51132.1.S1_at--783--7791Chr08:3944453..3944477 (25 bp)
GGTCCTTCATGAATCTATCTCCATA
LOC_Os08g07060
Os.51132.1.S1_at--612--9811Chr08:3944595..3944619 (25 bp)
TAACTGTTTTCAGTCGTCTGGGCTT
LOC_Os08g07060
Os.51132.1.S1_at--794--3891Chr08:3944612..3944636 (25 bp)
CTGGGCTTTGCTATATGTTGTTGTT
LOC_Os08g07060
Os.51132.1.S1_at--165--6551Chr08:3944708..3944732 (25 bp)
GATTTTGCTTCTGGTGCTAGTAACT
LOC_Os08g07060
Os.51132.1.S1_at--81--7071Chr08:3944735..3944759 (25 bp)
GTAAGCTCCTGCAACTGTGATATGA
LOC_Os08g07060
Os.51132.1.S1_at--956--351Chr08:3944762..3944786 (25 bp)
ATAATTTTGCCACTAACGCCTTGCT
LOC_Os08g07060
Target Sequence 
GTGAACTTGCCAGATATGCCGCAATGCTGGCCCCTCACCAGATGAGCATGAGGCTTGGTGTGGTCTTCAACCCGGAGGCG
CTGGAGCTGTTTGTGATGAAGAAGGTGTTCATTGTTTACTCATGGCTAAAGCAGCAGGAACATCCTAAACCTGGACTCAA
GACGGCTGACATGGCCAGGATGCTTGGTTTCGGTATAGGAGATGAATTATTCGACTTGATTGNGAAGTATCCTGCTGGTC
CTTCATGAATCTATCTCCATAACCTAGAGAATTTTGTCAATAATAGGCATCACATCATACCTTTTTCTTTTTTTTTTTAA
GCATCACCCGGGGCGAAATGCTCACCTGAATATGGATTACATCATACTGAATCAAATGATAACTGTTTTCAGTCGTCTGG
GCTTTGCTATATGTTGTTGTTGTCTACAGGAAACAATTCAATGTGTAAATAGTGCCAAAGAAATCAAATTTTAGCTCAGG
AGTACAGTTTGAGATTTTGCTTCTGGTGCTAGTAACTTTGTAAGCTCCTGCAACTGTGATATGAATATAATTTTGCCACT
AACGCCTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis