Browse Element(s) Details


Os.51158.1.S1_at

Description gb:AK061204.1
DB_XREF= gi:32971222
TID=Os.51158.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B05, full insert sequence.
FL= gb:AK099021.1 gb:AK061204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1419011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14130OsAffx.29188.1.S1_at10/118+8442291..8443326hypothetical protein
LOC_Os08g14140NANA8+8445317..8445571hypothetical protein
LOC_Os08g14150NANA8+8448698..8449196hypothetical protein
LOC_Os08g14160NANA8+8449458..8449712hypothetical protein
LOC_Os08g14170NANA8+8453627..8457433retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14180OsAffx.29191.1.S1_at11/118+8458570..8463167Sulfotransferase domain containing protein, expressed
LOC_Os08g14190Os.51158.1.S1_at11/118+8466178..8469246Sulfotransferase domain containing protein, expressed
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein
LOC_Os08g14220OsAffx.29192.1.S1_at11/118+8491020..8493756expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51158.1.S1_at--385--6851Chr08:8466734..8466758 (25 bp)
GTTTGCTGGTCCTGTCTGGGATCAC
LOC_Os08g14190
Os.51158.1.S1_at--54--7671Chr08:8466717..8466741 (25 bp)
GGGATCACTTGCTTGGTTACTGGAG
LOC_Os08g14190
Os.51158.1.S1_at--539--10091Chr08:8466675..8466699 (25 bp)
TAGGCCGAGTGCTCTTCTTGAAATA
LOC_Os08g14190
Os.51158.1.S1_at--887--1031Chr08:8466645..8466669 (25 bp)
AGGTGCTTCGAGACCCAGTGAACAC
LOC_Os08g14190
Os.51158.1.S1_at--967--5491Chr08:8466626..8466650 (25 bp)
GAACACCGTTAGAGAGCTCGCACAA
LOC_Os08g14190
Os.51158.1.S1_at--1046--9331Chr08:8466609..8466633 (25 bp)
TCGCACAATTTGTCGGGCAGCCATT
LOC_Os08g14190
Os.51158.1.S1_at--1151--7591Chr08:8466595..8466619 (25 bp)
GGGCAGCCATTCTCTGACACAGAGG
LOC_Os08g14190
Os.51158.1.S1_at--1128--1211Chr08:8466471..8466495 (25 bp)
AGTTCTCGCACGACTCGTATTTTAG
LOC_Os08g14190
Os.51158.1.S1_at--842--7571Chr08:8466355..8466379 (25 bp)
GGGCTCACCATATGATGCGCCATTA
LOC_Os08g14190
Os.51158.1.S1_at--787--2431Chr08:8466269..8466293 (25 bp)
AACAAAGCCTCCTAGCCTGTTTGGA
LOC_Os08g14190
Os.51158.1.S1_at--69--4311Chr08:8466199..8466223 (25 bp)
CCTATGTAATTTTCGGTGCACCAAA
LOC_Os08g14190
Target Sequence 
GTTTGCTGGTCCTGTCTGGGATCACTTGCTTGGTTACTGGAGGGCAAGCAAAATAGATCTAGGCCGAGTGCTCTTCTTGA
AATATGAGGAGGTGCTTCGAGACCCAGTGAACACCGTTAGAGAGCTCGCACAATTTGTCGGGCAGCCATTCTCTGACACA
GAGGAAGAAGCTGGCATTGTTGCGGAGATCGTCAAGCTATGTAGCCTAGAGAGTCTAAGGAGCCAGAAAGCCAACAAAGA
AGGCATACAAGGTGTGTACATCAAGTTCTCGCACGACTCGTATTTTAGGAAGGGGGTGGAAGGGGACTGGAGGAACCACA
TGACTCCTAAGATGGGCGAACATCTGGATTCGATTATGCGAGAAAAGTTTGATGGATCGGGGCTCACCATATGATGCGCC
ATTATGGCCGGGGTTTCATCTTTTAATTTGTAGTCACAGTTTTCAAGCTATGTGTTTCATAATAAAACAAAGCCTCCTAG
CCTGTTTGGAGGCTTAACTTTAACTGTTTATGCTTATAAACAGGTACATCTATGACCTATGTAATTTTCGGTGCACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis