Browse Element(s) Details


OsAffx.16990.1.S1_at

Description tigr:9636.m01413
TID=OsAffx.16990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=xyloglucan endotransglycosylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1420011/11Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14170NANA8+8453627..8457433retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14180OsAffx.29191.1.S1_at11/118+8458570..8463167Sulfotransferase domain containing protein, expressed
LOC_Os08g14190Os.51158.1.S1_at11/118+8466178..8469246Sulfotransferase domain containing protein, expressed
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein
LOC_Os08g14220OsAffx.29192.1.S1_at11/118+8491020..8493756expressed protein
LOC_Os08g14230Os.11713.1.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.3.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.1.S1_x_at6/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230OsAffx.15635.1.S1_at1/118+8502396..8512266Villin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16990.1.S1_at--833--2611Chr08:8482287..8482409 (25 bp)
AACCGTGACTACTCTTTATATGATA
LOC_Os08g14200
OsAffx.16990.1.S1_at--513--10191Chr08:8482404..8482425 (22 bp)
TATATGATAACAGAGGGCCTATGGC
LOC_Os08g14200
OsAffx.16990.1.S1_at--145--1091Chr08:8482414..8482438 (25 bp)
AGGGCCTATGGCAATTCCACGACGA
LOC_Os08g14200
OsAffx.16990.1.S1_at--779--9211Chr08:8482429..8482453 (25 bp)
TCCACGACGAGATTGACCTTGAGTT
LOC_Os08g14200
OsAffx.16990.1.S1_at--685--1871Chr08:8482435..8482459 (25 bp)
ACGAGATTGACCTTGAGTTCTTGGG
LOC_Os08g14200
OsAffx.16990.1.S1_at--395--7611Chr08:8482458..8482482 (25 bp)
GGGAACTCCACTGGCGAGCCGTACA
LOC_Os08g14200
OsAffx.16990.1.S1_at--658--7031Chr08:8482478..8482502 (25 bp)
GTACACCCTGCACACTAACCTGTAT
LOC_Os08g14200
OsAffx.16990.1.S1_at--872--3311Chr08:8482490..8482514 (25 bp)
CACTAACCTGTATGCCAGAGGGAAA
LOC_Os08g14200
OsAffx.16990.1.S1_at--510--4811Chr08:8482538..8482562 (25 bp)
GCTCTGGTTTGATCCCACTGCAGAC
LOC_Os08g14200
OsAffx.16990.1.S1_at--719--10251Chr08:8482545..8482569 (25 bp)
TTTGATCCCACTGCAGACTTCCATA
LOC_Os08g14200
OsAffx.16990.1.S1_at--774--5591Chr08:8482594..8483072 (25 bp)
GAAATATCCTAATCCTTGTTGATGA
LOC_Os08g14200
Target Sequence 
AACCGTGACTACTCTTTATATGATAACAGAGGGCCTATGGCAATTCCACGACGAGATTGACCTTGAGTTCTTGGGGAACT
CCACTGGCGAGCCGTACACCCTGCACACTAACCTGTATGCCAGAGGGAAAGGTGGCAGAGAGAAGCGGTACAAGCTCTGG
TTTGATCCCACTGCAGACTTCCATACCTACACCATCATCTGGAACCAAAGAAATATCCTAATCCTTGTTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis