Browse Element(s) Details


OsAffx.5812.1.S1_at

Description tigr:9636.m01414
TID=OsAffx.5812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AJ555154 putative xyloglucan endotransglycosylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1421011/11Glycosyl hydrolases family 16 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14180OsAffx.29191.1.S1_at11/118+8458570..8463167Sulfotransferase domain containing protein, expressed
LOC_Os08g14190Os.51158.1.S1_at11/118+8466178..8469246Sulfotransferase domain containing protein, expressed
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein
LOC_Os08g14220OsAffx.29192.1.S1_at11/118+8491020..8493756expressed protein
LOC_Os08g14230Os.11713.1.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.3.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.1.S1_x_at6/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230OsAffx.15635.1.S1_at1/118+8502396..8512266Villin-4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5812.1.S1_at--53--9871Chr08:8488286..8488310 (25 bp)
TACACCTTGCACACTAACATCTATG
LOC_Os08g14210
OsAffx.5812.1.S1_at--143--6991Chr08:8488339..8488363 (25 bp)
GTACCGGCTTTGGTTTGATCCAACA
LOC_Os08g14210
OsAffx.5812.1.S1_at--1015--6231Chr08:8488596..8488620 (25 bp)
GATGGCACACCAATTCGGCAGATGA
LOC_Os08g14210
OsAffx.5812.1.S1_at--180--8611Chr08:8488715..8488739 (25 bp)
TGGGCGTATCAAAACCGACTGGTCT
LOC_Os08g14210
OsAffx.5812.1.S1_at--895--5731Chr08:8488731..8488755 (25 bp)
GACTGGTCTCAAGCACCATTTACCG
LOC_Os08g14210
OsAffx.5812.1.S1_at--623--3571Chr08:8488747..8488771 (25 bp)
CATTTACCGCATTCTTCCGGAACTA
LOC_Os08g14210
OsAffx.5812.1.S1_at--978--8151Chr08:8488765..8488789 (25 bp)
GGAACTACCAAGCTAACGCCTGCAT
LOC_Os08g14210
OsAffx.5812.1.S1_at--505--2611Chr08:8488779..8488803 (25 bp)
AACGCCTGCATTCCGTACAAAACTG
LOC_Os08g14210
OsAffx.5812.1.S1_at--1157--191Chr08:8488809..8488833 (25 bp)
ATTTGCAGCCAAGGGTCTAATGACA
LOC_Os08g14210
OsAffx.5812.1.S1_at--484--2151Chr08:8488831..8488855 (25 bp)
ACAGCAGCTGGTTTACCCAGGATTT
LOC_Os08g14210
OsAffx.5812.1.S1_at--947--6551Chr08:8488911..8488935 (25 bp)
GATTACTGCACTGACTCAAGGAGGT
LOC_Os08g14210
Target Sequence 
TACACCTTGCACACTAACATCTATGCCAGAGGAACAGGTGGCCGAGAAAAGCAGTACCGGCTTTGGTTTGATCCAACAGA
AGACTTCCATACCTACACCATCATCTGGAACCCGCAGATGATCTTAATACTTGTTGATGGCACACCAATTCGGCAGATGA
AGAATCAGCTAAGGAATGATATACCCTTCCCGCTATATCAACCAATGAGGCTGTACGCCAGCATCTGGGATGCCGATGAC
TGGGCAACGCAGGGTGGGCGTATCAAAACCGACTGGTCTCAAGCACCATTTACCGCATTCTTCCGGAACTACCAAGCTAA
CGCCTGCATTCCGTACAAAACTGCCTGGATTTGCAGCCAAGGGTCTAATGACAGCAGCTGGTTTACCCAGGATTTGGATG
AGGAAGGGAAGCAGAAACTTAAGGACGTAGATGATAACTACAAGATTTATGATTACTGCACTGACTCAAGGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis