Browse Element(s) Details


OsAffx.29192.1.S1_at

Description tigr:9636.m01415
TID=OsAffx.29192.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At2g41350F13H10.10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1422011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14190Os.51158.1.S1_at11/118+8466178..8469246Sulfotransferase domain containing protein, expressed
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein
LOC_Os08g14220OsAffx.29192.1.S1_at11/118+8491020..8493756expressed protein
LOC_Os08g14230Os.11713.1.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.3.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.1.S1_x_at6/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230OsAffx.15635.1.S1_at1/118+8502396..8512266Villin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29192.1.S1_at--230--6311Chr08:8492786..8493091 (25 bp)
GATGAGCAGCTTTGTTGTGGCCAGT
LOC_Os08g14220
OsAffx.29192.1.S1_at--1002--9691Chr08:8492701..8492725 (25 bp)
TCAAAGGCGCTTCTTGATTACACAA
LOC_Os08g14220
OsAffx.29192.1.S1_at--928--4431Chr08:8492671..8492695 (25 bp)
GCCATCACCAAGCTTACTGAGCTCA
LOC_Os08g14220
OsAffx.29192.1.S1_at--520--1811Chr08:8492451..8492475 (25 bp)
ACGCCAATATATACTCCAAGTCTCC
LOC_Os08g14220
OsAffx.29192.1.S1_at--455--2931Chr08:8491639..8491662 (24 bp)
AAGGCAATGCTCAACCGAGTGGGAT
LOC_Os08g14220
OsAffx.29192.1.S1_at--1039--6111Chr08:8491623..8491647 (25 bp)
GAGTGGGATATACACCGGAGATCAA
LOC_Os08g14220
OsAffx.29192.1.S1_at--1029--5691Chr08:8491547..8491571 (25 bp)
GACTAAACCCATTGCAGACACATTG
LOC_Os08g14220
OsAffx.29192.1.S1_at--536--10751Chr08:8491525..8491549 (25 bp)
TTGAGAAGCTACCAGGACTTGCCAC
LOC_Os08g14220
OsAffx.29192.1.S1_at--836--951Chr08:8491099..8491536 (25 bp)
AGGACTTGCCACCACTACTGAGCTA
LOC_Os08g14220
OsAffx.29192.1.S1_at--345--531Chr08:8491067..8491091 (25 bp)
ATCGACAACCAGGATGCCTCTGAAC
LOC_Os08g14220
OsAffx.29192.1.S1_at--1030--4451Chr08:8491052..8491076 (25 bp)
GCCTCTGAACATCTTGGCCTGTTTG
LOC_Os08g14220
Target Sequence 
GATGAGCAGCTTTGTTGTGGCCAGTGCGGACCTGTCGCTGAGGAGAGCAGAGGTGGAGGAGAAGAGGGACAAGGTGCATA
AGGAATCAAAGGCGCTTCTTGATTACACAAGGAAGGCCATCACCAAGCTTACTGAGCTCAAGAAGATGCTGGAAAAATTT
AAAAATGATGTGGAGAAGCAACAAGCAGAACAGATGACGGATTGGCAGACAAAGTTGGTTATGATGGACTCAAAGGAACG
CCAATATATACTCCAAGTCTCCAATTATAAGGCAATGCTCAACCGAGTGGGATATACACCGGAGATCAATCATGGTGTGC
TGATGGAAATGGCAGAGCATAAGAAGGATCTAGAGAGAAAGACTAAACCCATTGCAGACACATTGAGAAGCTACCAGGAC
TTGCCACCACTACTGAGCTACCATGTCATCGACAACCAGGATGCCTCTGAACATCTTGGCCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis