Browse Element(s) Details


Os.11713.3.S1_at

Description gb:AK122013.1
DB_XREF= gi:37991636
TID=Os.11713.3
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033111J02, full insert sequence.
FL= gb:AK122013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1423011/11Villin-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14200Os.23174.1.S1_s_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200Os.23174.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14200OsAffx.16990.1.S1_at11/118+8482027..8483559Brassinosteroid-regulated protein BRU1 precursor, putative, expressed
LOC_Os08g14210OsAffx.5812.1.S1_at11/118+8487518..8488973Glycosyl hydrolases family 16 protein
LOC_Os08g14220OsAffx.29192.1.S1_at11/118+8491020..8493756expressed protein
LOC_Os08g14230Os.11713.1.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.3.S1_at11/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230Os.11713.1.S1_x_at6/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14230OsAffx.15635.1.S1_at1/118+8502396..8512266Villin-4, putative, expressed
LOC_Os08g14250NANA8+8533940..8539012retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0030835biological_processnegative regulation of actin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding
GO:0051015molecular_functionactin filament binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11713.3.S1_at--807--1351Chr08:8511687..8511709 (23 bp)
AGAGACCTACTTATCTTCGGCTGAA
LOC_Os08g14230
Os.11713.3.S1_at--989--8991Chr08:8511777..8511801 (25 bp)
TGAAGATCGCTCTCCAACTTTTTTA
LOC_Os08g14230
Os.11713.3.S1_at--499--10511Chr08:8511829..8511853 (25 bp)
TTCAACCTCCAGCTAAAGCACTGTT
LOC_Os08g14230
Os.11713.3.S1_at--817--2711Chr08:8511844..8511868 (25 bp)
AAGCACTGTTTGATCGTACAAGTCA
LOC_Os08g14230
Os.11713.3.S1_at--984--10791Chr08:8511871..8511895 (25 bp)
TTGTATATGCCTGAATAGCCCTTGG
LOC_Os08g14230
Os.11713.3.S1_at--621--7171Chr08:8511963..8511987 (25 bp)
GTCTGAGTTTGCCTTTGCTAGTTTC
LOC_Os08g14230
Os.11713.3.S1_at--673--10611Chr08:8511998..8512022 (25 bp)
TTCGATTCATAGGTGTGCCCTCTTA
LOC_Os08g14230
Os.11713.3.S1_at--493--451Chr08:8512025..8512049 (25 bp)
ATCTCCCATTTTACCAAGCGTTCAG
LOC_Os08g14230
Os.11713.3.S1_at--854--6731Chr08:8512044..8512068 (25 bp)
GTTCAGTACTGGTTCGAGGGTCACA
LOC_Os08g14230
Os.11713.3.S1_at--24--9391Chr08:8512057..8512081 (25 bp)
TCGAGGGTCACACAGGTTTGGTTTT
LOC_Os08g14230
Os.11713.3.S1_at--930--111Chr08:8512099..8512123 (25 bp)
ATTAATCTACCCTGGTGTGTCCTTT
LOC_Os08g14230
Target Sequence 
AGAGACCTACTTATCTTCGGCTGAATTCAAAGACAAGTTTGGAATGACAAAGGAAGCATTCAGCAAGCTTCCAANGTGGA
AGCAAAATAGAATGAAGATCGCTCTCCAACTTTTTTAGCTTGAATCATGCTTAAAANTTCCTCATTCAACCTCCAGCTAA
AGCACTGTTTGATCGTACAAGTCAACTTGTATATGCCTGAATAGCCCTTGGCAGCCATGGTCGTTGNTGNCAATGNTGTC
TATTTTCACATTGTGTGGGATNGAGTNCCTCCATTTTTCCTNAGTCTGAGTTTGCCTTTGCTAGTTTCGGCTTATNCTTT
CGATTCATAGGTGTGCCCTCTTACCATCTCCCATTTTACCAAGCGTTCAGTACTGGTTCGAGGGTCACACAGGTTTGGTT
TTGAGGCTTGCAGTTTTGTATTAATCTACCCTGGTGTGTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11713.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis