Browse Element(s) Details


Os.51171.1.S1_at

Description gb:AK061279.1
DB_XREF= gi:32971297
TID=Os.51171.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F04, full insert sequence.
FL= gb:AK061279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3286011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32820OsAffx.26295.1.S1_at11/114+19632003..19633064expressed protein
LOC_Os04g32830OsAffx.26295.2.S1_at11/114+19634661..19635554expressed protein
LOC_Os04g32840Os.49194.1.S1_at10/114+19638917..19640507expressed protein
LOC_Os04g32840OsAffx.22097.3.S1_at1/114+19638917..19640507expressed protein
LOC_Os04g32850Os.54602.1.S1_s_at11/114+19647736..19649497expressed protein
LOC_Os04g32850OsAffx.14103.1.S1_x_at11/114+19647736..19649497expressed protein
LOC_Os04g32850Os.27244.1.A1_s_at8/114+19647736..19649497expressed protein
LOC_Os04g32860Os.51171.1.S1_at11/114+19654178..19656880expressed protein
LOC_Os04g32870OsAffx.26296.1.S1_at11/114+19661722..19663182pentatricopeptide, putative
LOC_Os04g32880Os.48035.1.S1_at10/114+19663926..19671656CBS domain containing protein, expressed
LOC_Os04g32890Os.46500.1.S1_at9/114+19678051..19679973transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51171.1.S1_at--336--4051Chr04:19654669..19654693 (25 bp)
CGATGAGAAGAAGCCCGATCCCAAG
LOC_Os04g32860
Os.51171.1.S1_at--1013--651Chr04:19654630..19654654 (25 bp)
ATGCAAGCTCATACCATTCCCGTAC
LOC_Os04g32860
Os.51171.1.S1_at--196--7131Chr04:19654386..19654410 (25 bp)
GTCATGTAGCCAGCGCTGGTCATCT
LOC_Os04g32860
Os.51171.1.S1_at--837--8571Chr04:19654370..19654394 (25 bp)
TGGTCATCTCCTTCCCCGTTCATAT
LOC_Os04g32860
Os.51171.1.S1_at--651--4191Chr04:19654356..19654380 (25 bp)
CCCGTTCATATATCCGTCCATGAAT
LOC_Os04g32860
Os.51171.1.S1_at--807--3571Chr04:19654350..19654374 (25 bp)
CATATATCCGTCCATGAATGTGTTC
LOC_Os04g32860
Os.51171.1.S1_at--1050--2971Chr04:19654334..19654358 (25 bp)
AATGTGTTCTTGAAAGTCTCACCGG
LOC_Os04g32860
Os.51171.1.S1_at--814--10711Chr04:19654325..19654349 (25 bp)
TTGAAAGTCTCACCGGACGTTTGTT
LOC_Os04g32860
Os.51171.1.S1_at--569--3751Chr04:19654317..19654341 (25 bp)
CTCACCGGACGTTTGTTATTATGAA
LOC_Os04g32860
Os.51171.1.S1_at--41--5351Chr04:19654295..19654319 (25 bp)
GAAGTTCATCACTTTGGGCTTTGAT
LOC_Os04g32860
Os.51171.1.S1_at--543--9911Chr04:19654221..19654245 (25 bp)
TACTCCATGTATTTAGAGAATGCTT
LOC_Os04g32860
Target Sequence 
CGATGAGAAGAAGCCCGATCCCAAGCCCAAGCCCGACCCATGCAAGCTCATACCATTCCCGTACCCTTACGTGTACCCGC
CGCCGCCGCCGTGCGGCGGCTGCGCCACCCCGCACTGCTGCGACTGCCACCCCAAGCCACCTCCGCCGGCGCCGGCGCCA
GCGAAGCCAGCGTGCGGCTGCCCGGCTTGGTCGTCGCCGTGCCACTGCTACCCGCCGCCGGCCATGCTGCCGTACCCGCC
GGTGCTCGTCTGCGACGAGGGCCCGCAGTACGGCGCCTGCGCCGTCATGTAGCCAGCGCTGGTCATCTCCTTCCCCGTTC
ATATATCCGTCCATGAATGTGTTCTTGAAAGTCTCACCGGACGTTTGTTATTATGAAGTTCATCACTTTGGGCTTTGATT
GGGTGTGGGAGGATTGCTTATGTTTTTTAAGATGATGGAAATTAATATTACTCCATGTATTTAGAGAATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis