Browse Element(s) Details


Os.51198.1.S1_at

Description gb:AK061534.1
DB_XREF= gi:32971552
TID=Os.51198.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F05, full insert sequence.
FL= gb:AK061534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0381011/11expressed protein
LOC_Os09g025101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03760Os.4629.1.S1_at11/111+1568281..1573469expressed protein
LOC_Os01g03770NANA1+1577645..1579147hypothetical protein
LOC_Os01g03780NANA1+1582793..1588757retrotransposon protein, putative, unclassified, expressed
LOC_Os01g03790Os.28943.1.S1_x_at3/111+1589377..1589781retrotransposon protein, putative, unclassified
LOC_Os01g03800NANA1+1590426..1592961transposon protein, putative, Mutator sub-class
LOC_Os01g03810Os.51198.1.S1_at11/111+1594288..1595312expressed protein
LOC_Os01g03820NANA1+1596496..1601412C2 domain containing protein, expressed
LOC_Os01g03830Os.28346.3.S1_x_at11/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830OsAffx.17950.1.S1_at7/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.1.S1_x_at4/111+1605786..1614707retrotransposon protein, putative, unclassified
LOC_Os01g03830Os.28346.5.S1_x_at1/111+1605786..1614707retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51198.1.S1_at--442--1251Chr01:1594741..1594765 (25 bp)
AGTTGGCAGAGGTCAAACTTTGCAA
LOC_Os01g03810
Os.51198.1.S1_at--968--7551Chr01:1594633..1594657 (25 bp)
GGGCTCTGATTTGTTGGAACTGGAA
LOC_Os01g03810
Os.51198.1.S1_at--278--8151Chr01:1594554..1594578 (25 bp)
GGAACGAACGCGTCAAAATCGGGCT
LOC_Os01g03810
Os.51198.1.S1_at--194--2451Chr01:1594540..1594564 (25 bp)
AAAATCGGGCTCGTGCGTGTTCGTC
LOC_Os01g03810
Os.51198.1.S1_at--1090--9131Chr01:1594527..1594551 (25 bp)
TGCGTGTTCGTCAATCGTCAGCGGC
LOC_Os01g03810
Os.51198.1.S1_at--578--8491Chr01:1594480..1594504 (25 bp)
TGGCTCTCATTGGTTTGTACTCCTA
LOC_Os01g03810
Os.51198.1.S1_at--474--9231Chr01:1594460..1594484 (25 bp)
TCCTACTCCGTAGTACCTTGGAATG
LOC_Os01g03810
Os.51198.1.S1_at--53--6971Chr01:1594448..1594472 (25 bp)
GTACCTTGGAATGCGACTGATTTTT
LOC_Os01g03810
Os.51198.1.S1_at--790--4331Chr01:1594384..1594408 (25 bp)
CCATGCCATTACAACTTCAGCTATT
LOC_Os01g03810
Os.51198.1.S1_at--702--10011Chr01:1594339..1594363 (25 bp)
TAGCAAAACCGGCTGGGTGCCATCG
LOC_Os01g03810
Os.51198.1.S1_at--918--2635Chr09:2095421..2095442 (22 bp)
AACCATGCCATTATATACGTCTGAA
NONE
Target Sequence 
AGTTGGCAGAGGTCAAACTTTGCAAGTTTGGAATGATTCTATAAACTCCAAGAACCAAGAACCAGGGTGGGACAAAGGGG
GGAAATTTTATTTTTTGTGAGTTGAGGGGGGCTCTGATTTGTTGGAACTGGAAGCGATTGGGCGGCAGAATCAAGTAGTA
GTGGATTTCAGTGTGCTGGGACAGGAGGGAACGAACGCGTCAAAATCGGGCTCGTGCGTGTTCGTCAATCGTCAGCGGCG
CAGCGCTCTTCTGTGCCACGCTGGCTCTCATTGGTTTGTACTCCTACTCCGTAGTACCTTGGAATGCGACTGATTTTTTT
GATCGATCTCTTGTTTGTTTCTTTGGGTTAATTGGAACCATGCCATTACAACTTCAGCTATTTGGAAATATGCCATTACA
ATTAGCAAAACCGGCTGGGTGCCATCGCAATTTCTTCCAAATTGGAACCATGCCATTATATACGTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis