Browse Element(s) Details


Os.4629.1.S1_at

Description gb:AK059332.1
DB_XREF= gi:32969350
TID=Os.4629.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A08, full insert sequence.
FL= gb:AK121214.1 gb:AK059332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0376011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03720Os.31381.1.S1_at11/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03720Os.57514.1.S1_x_at1/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03740Os.53305.1.S1_at11/111+1559420..1563356S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.855.1.S1_at11/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.53101.1.S1_at1/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03750Os.40187.1.S1_at10/111+1566515..1567718expressed protein
LOC_Os01g03760Os.4629.1.S1_at11/111+1568281..1573469expressed protein
LOC_Os01g03770NANA1+1577645..1579147hypothetical protein
LOC_Os01g03780NANA1+1582793..1588757retrotransposon protein, putative, unclassified, expressed
LOC_Os01g03790Os.28943.1.S1_x_at3/111+1589377..1589781retrotransposon protein, putative, unclassified
LOC_Os01g03800NANA1+1590426..1592961transposon protein, putative, Mutator sub-class
LOC_Os01g03810Os.51198.1.S1_at11/111+1594288..1595312expressed protein
LOC_Os01g03820NANA1+1596496..1601412C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4629.1.S1_at--647--8251Chr01:1568839..1568863 (25 bp)
GGCAGCCTGCTGGTTATCACGCTTG
LOC_Os01g03760
Os.4629.1.S1_at--1078--10411Chr01:1568826..1568850 (25 bp)
TTATCACGCTTGCTGTTGCCGCAGG
LOC_Os01g03760
Os.4629.1.S1_at--905--4871Chr01:1568802..1568826 (25 bp)
GCTTTGTGCTATCTCCTAACCTGGA
LOC_Os01g03760
Os.4629.1.S1_at--597--8551Chr01:1568781..1568805 (25 bp)
TGGAGATCCCATCCGACTGGGACAA
LOC_Os01g03760
Os.4629.1.S1_at--412--1911Chr01:1568766..1568790 (25 bp)
ACTGGGACAAGCTCCAGGCCATGGT
LOC_Os01g03760
Os.4629.1.S1_at--912--7151Chr01:1568738..1568762 (25 bp)
GTCTCACCTGTCGTTCTAGAAGTAT
LOC_Os01g03760
Os.4629.1.S1_at--761--9851Chr01:1568602..1568626 (25 bp)
TACAGTTACCTTTTTCGCATCTTTT
LOC_Os01g03760
Os.4629.1.S1_at--434--3051Chr01:1568514..1568538 (25 bp)
AATCGGGTTAGACTGATCGGTCAGA
LOC_Os01g03760
Os.4629.1.S1_at--1061--2291Chr01:1568471..1568495 (25 bp)
AAATGGTTCGGCCTGAGGACTAACA
LOC_Os01g03760
Os.4629.1.S1_at--774--951Chr01:1568456..1568480 (25 bp)
AGGACTAACACCACCTTTGCTCTAT
LOC_Os01g03760
Os.4629.1.S1_at--352--9551Chr01:1568436..1568460 (25 bp)
TCTATCTCGTTTTTCTGCATCTGCA
LOC_Os01g03760
Target Sequence 
GGCAGCCTGCTGGTTATCACGCTTGCTGTTGCCGCAGGCTTTGTGCTATCTCCTAACCTGGAGATCCCATCCGACTGGGA
CAAGCTCCAGGCCATGGTGGCGTCTCACCTGTCGTTCTAGAAGTATATTTGTCCAGCAGTTGATAAAAGCTTATACAGAG
AATCCAAAGGAGATGAAGTGAAGATTCTAGGAGTGAATGAAGAAGGCTAATAAGAAGGGATAGATCCTAGAAAAGAATAC
AGTTACCTTTTTCGCATCTTTTCCCAAGCCCGTAGTTGGGGGGAGATGCAAGCAACTTTGCAGAGATAGAGAGTTAAAAA
GTTTTAATCGGGTTAGACTGATCGGTCAGAAGAAGGAAAGGTTGGGCCAAATGGTTCGGCCTGAGGACTAACACCACCTT
TGCTCTATCTCGTTTTTCTGCATCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis