Browse Element(s) Details


Os.855.1.S1_at

Description gb:AK059608.1
DB_XREF= gi:32969626
TID=Os.855.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative bifunctional nuclease (P0409B08.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F03, full insert sequence.
FL= gb:AK059608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0373011/11S1/P1 Nuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03720Os.31381.1.S1_at11/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03720Os.57514.1.S1_x_at1/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03740Os.53305.1.S1_at11/111+1559420..1563356S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.855.1.S1_at11/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.53101.1.S1_at1/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03750Os.40187.1.S1_at10/111+1566515..1567718expressed protein
LOC_Os01g03760Os.4629.1.S1_at11/111+1568281..1573469expressed protein
LOC_Os01g03770NANA1+1577645..1579147hypothetical protein
LOC_Os01g03780NANA1+1582793..1588757retrotransposon protein, putative, unclassified, expressed
LOC_Os01g03790Os.28943.1.S1_x_at3/111+1589377..1589781retrotransposon protein, putative, unclassified
LOC_Os01g03800NANA1+1590426..1592961transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006308biological_processDNA catabolism
GO:0048443biological_processstamen development
GO:0000014molecular_functionsingle-stranded DNA specific endodeoxyribonuclease activity
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
GO:0016891molecular_functionendoribonuclease activity, producing 5'-phosphomonoesters
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.855.1.S1_at--791--5191Chr01:1565612..1565636 (25 bp)
GCAATTGAGAGCATACATCTGTCCT
LOC_Os01g03730
Os.855.1.S1_at--991--2091Chr01:1565626..1565650 (25 bp)
ACATCTGTCCTGCAATTATGCCTAC
LOC_Os01g03730
Os.855.1.S1_at--858--1291Chr01:1565787..1565811 (25 bp)
AGATGACTATTTCTACTCTCGGTAC
LOC_Os01g03730
Os.855.1.S1_at--748--1991Chr01:1565801..1565825 (25 bp)
ACTCTCGGTACCCAATCGTGGAGAA
LOC_Os01g03730
Os.855.1.S1_at--732--2791Chr01:1565824..1565848 (25 bp)
AAGAGGCTAGCACAGGCCGGCATCA
LOC_Os01g03730
Os.855.1.S1_at--438--891Chr01:1565837..1565861 (25 bp)
AGGCCGGCATCAGATTGGCGTTGAT
LOC_Os01g03730
Os.855.1.S1_at--742--10871Chr01:1565851..1565875 (25 bp)
TTGGCGTTGATACTGAACCGGATAT
LOC_Os01g03730
Os.855.1.S1_at--219--5591Chr01:1565954..1565978 (25 bp)
GAAATGTTATTTGTTGCTGCCACTC
LOC_Os01g03730
Os.855.1.S1_at--1059--5111Chr01:1566089..1566113 (25 bp)
GCACATAGGCCTAGTACAGCATTCA
LOC_Os01g03730
Os.855.1.S1_at--59--7051Chr01:1566205..1566229 (25 bp)
GTAATTCCTCTATGTTTGAACAGTG
LOC_Os01g03730
Os.855.1.S1_at--586--7471Chr01:1566244..1566268 (25 bp)
GTGTGTTTCAAATCGATTCATTTCC
LOC_Os01g03730
Target Sequence 
GCAATTGAGAGCATACATCTGTCCTGCAATTATGCCTACAAAGATGTTGAGCAAGACATTACTCTAGGAGATGACTATTT
CTACTCTCGGTACCCAATCGTGGAGAAGAGGCTAGCACAGGCCGGCATCAGATTGGCGTTGATACTGAACCGGATATTTG
GTGANGGATNAAACCNAGATNGGTNAATGTCANTACCATTACAAGTTCAGTAAGGGTTATGATCACCAGAAATATTCAGG
AGAAATGTTATTTGTTGCTGCCACTCTAATTAGTGGTTGTGCACATATTTTATAAAAAGCACACATACCTATAGTATAGA
ATTCAAAAATGTAATTGTTGTAATTGCTTATTGGAAAGCACATTTATTTGTAAGAAGCACATAGGCCTAGTACAGCATTC
AAAACTGTAAATGCTGTCATTCATGTACAATTGAAAGTAGTCTGTGACAAGAAACACATAAGCCTAGTATAGCATTCATA
AATGTAATTGTTGTAATTCCTCTATGTTTGAACAGTGTACCACTTGAATAAGTGTGTTTCAAATCGATTCATTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis