Browse Element(s) Details


Os.31381.1.S1_at

Description gb:AK107424.1
DB_XREF= gi:32992633
TID=Os.31381.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myb-related transcription factor (P0409B08.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-F10, full insert sequence.
FL= gb:AK107424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0372011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os01g03720Os.31381.1.S1_at11/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03720Os.57514.1.S1_x_at1/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03740Os.53305.1.S1_at11/111+1559420..1563356S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.855.1.S1_at11/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.53101.1.S1_at1/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03750Os.40187.1.S1_at10/111+1566515..1567718expressed protein
LOC_Os01g03760Os.4629.1.S1_at11/111+1568281..1573469expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31381.1.S1_at--365--691Chr01:1546556..1546580 (25 bp)
ATGACGATGATGACCGCCTCCGGCA
LOC_Os01g03720
Os.31381.1.S1_at--625--8231Chr01:1546535..1546559 (25 bp)
GGCAACGCCGGCAGCTACAACTACT
LOC_Os01g03720
Os.31381.1.S1_at--322--7851Chr01:1546404..1546428 (25 bp)
GGTAGCTACGTATCCAGCTGAGCTT
LOC_Os01g03720
Os.31381.1.S1_at--952--571Chr01:1546393..1546417 (25 bp)
ATCCAGCTGAGCTTAGCTGTAGCTA
LOC_Os01g03720
Os.31381.1.S1_at--96--2831Chr01:1546327..1546351 (25 bp)
AAGTTGCTTCTTGTGATGTCTCTCC
LOC_Os01g03720
Os.31381.1.S1_at--187--10831Chr01:1546317..1546341 (25 bp)
TTGTGATGTCTCTCCATTAAAGCGA
LOC_Os01g03720
Os.31381.1.S1_at--860--6291Chr01:1546263..1546287 (25 bp)
GATGATGCTGTCACATTAGCTAATG
LOC_Os01g03720
Os.31381.1.S1_at--1101--6051Chr01:1546235..1546259 (25 bp)
GAGTTGTTCCATCATATCGATCAAG
LOC_Os01g03720
Os.31381.1.S1_at--668--5331Chr01:1546207..1546231 (25 bp)
GAAGTACTAGTGATCGATCAAGCAA
LOC_Os01g03720
Os.31381.1.S1_at--38--9751Chr01:1546162..1546186 (25 bp)
TCAATAGCGTGATGATTCCGATCGA
LOC_Os01g03720
Os.31381.1.S1_at--288--9371Chr01:1546064..1546088 (25 bp)
TCGATGGTGCATGTAACTATTGTTA
LOC_Os01g03720
Target Sequence 
ATGACGATGATGACCGCCTCCGGCAACGCCGGCAGCTACAACTACTGCGGCGGCGCCATGGACGGCGGCGACACGTGGAG
GTCCGACGAGGTGTGCCAAGCGGCGGCGAGAAAGCTCGGCGAGTGGGGAGGAGGAATCTAGCTAGCTAGCTAGGTAGCTA
CGTATCCAGCTGAGCTTAGCTGTAGCTAAAGGCTAAGTGGATGGATGGATCATGGATAGATGAGATGGTAAGTTGCTTCT
TGTGATGTCTCTCCATTAAAGCGAGATGAGATGATGATCATGATGATGATGTTGATGATGCTGTCACATTAGCTAATGGA
TGAGTTGTTCCATCATATCGATCAAGATAGAAGTACTAGTGATCGATCAAGCAAAAATCAAAAGTAGAAGATGATCAATA
GCGTGATGATTCCGATCGATGGAGAGAATATTATTGAGATGTGTTAACATATTAGCTAGAGCTAGCTAGCTTCTTGTAGT
GGTTGATCGATCGATGGTGCATGTAACTATTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis