Browse Element(s) Details


Os.40187.1.S1_at

Description gb:NM_184212.1
DB_XREF= gi:34895515
TID=Os.40187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0375010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03720Os.31381.1.S1_at11/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03720Os.57514.1.S1_x_at1/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03740Os.53305.1.S1_at11/111+1559420..1563356S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.855.1.S1_at11/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.53101.1.S1_at1/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03750Os.40187.1.S1_at10/111+1566515..1567718expressed protein
LOC_Os01g03760Os.4629.1.S1_at11/111+1568281..1573469expressed protein
LOC_Os01g03770NANA1+1577645..1579147hypothetical protein
LOC_Os01g03780NANA1+1582793..1588757retrotransposon protein, putative, unclassified, expressed
LOC_Os01g03790Os.28943.1.S1_x_at3/111+1589377..1589781retrotransposon protein, putative, unclassified
LOC_Os01g03800NANA1+1590426..1592961transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40187.1.S1_at--82--3511NONE
CATGGATGGCGTCGTCTCAGATTGC
NONE
Os.40187.1.S1_at--966--10311Chr01:1567194..1567218 (25 bp)
TTTCTACACTCTCATGGTCGTCGCC
LOC_Os01g03750
Os.40187.1.S1_at--765--1891Chr01:1567073..1567183 (25 bp)
ACGTCACCAAGCGTGCCGTGGATAG
LOC_Os01g03750
Os.40187.1.S1_at--727--4251Chr01:1567058..1567082 (25 bp)
CCGTGGATAGCAGCGCGCCGTACGT
LOC_Os01g03750
Os.40187.1.S1_at--637--731Chr01:1566969..1566993 (25 bp)
ATGTTCGCCAGCAAGTACTGGCTCC
LOC_Os01g03750
Os.40187.1.S1_at--31--9411Chr01:1566850..1566874 (25 bp)
TCGTCAGGATGTTCGCCAGCGAGAT
LOC_Os01g03750
Os.40187.1.S1_at--447--1751Chr01:1566674..1566811 (25 bp)
ACCTCTTCGCCGCAAGGCAGGTGTA
LOC_Os01g03750
Os.40187.1.S1_at--319--8271Chr01:1566659..1566683 (25 bp)
GGCAGGTGTACCATGACGGCATCAA
LOC_Os01g03750
Os.40187.1.S1_at--500--3231Chr01:1566637..1566661 (25 bp)
CAAGAACAACATAGAGACCAGGCAT
LOC_Os01g03750
Os.40187.1.S1_at--266--111Chr01:1566614..1566638 (25 bp)
ATTCGGTTTCTCTGTGCCTGCTCTT
LOC_Os01g03750
Os.40187.1.S1_at--525--9571Chr01:1566593..1566617 (25 bp)
TCTTCTGCCCAATTGGGATCGCGAC
LOC_Os01g03750
Target Sequence 
CATGGATGGCGTCGTCTCAGATTGCCAGCTCCGCCTTCACCTGGGGCACCATCGCCGTCCTCCCTTTCTACACTCTCATG
GTCGTCGCCCCCAACGCCGACGTCACCAAGCGTGCCGTGGATAGCAGCGCGCCGTACGTCGCCCTCGGCATCCTCTACGC
CTACCTGCTCTACCTATCCTGGACTCCCGACACCCTACGCGCCATGTTCGCCAGCAAGTACTGGCTCCCCGAGTTGACGG
GGATCGTCAGGATGTTCGCCAGCGAGATGACCGTCGCCTCCGCCTGGATCCACCTCCTAGCCGTCGACCTCTTCGCCGCA
AGGCAGGTGTACCATGACGGCATCAAGAACAACATAGAGACCAGGCATTCGGTTTCTCTGTGCCTGCTCTTCTGCCCAAT
TGGGATCGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis