Browse Element(s) Details


Os.53305.1.S1_at

Description gb:AK071917.1
DB_XREF= gi:32981940
TID=Os.53305.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071I09, full insert sequence.
FL= gb:AK071917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0374011/11S1/P1 Nuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os01g03720Os.31381.1.S1_at11/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03720Os.57514.1.S1_x_at1/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03740Os.53305.1.S1_at11/111+1559420..1563356S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.855.1.S1_at11/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03730Os.53101.1.S1_at1/111+1562940..1566272S1/P1 Nuclease family protein, expressed
LOC_Os01g03750Os.40187.1.S1_at10/111+1566515..1567718expressed protein
LOC_Os01g03760Os.4629.1.S1_at11/111+1568281..1573469expressed protein
LOC_Os01g03770NANA1+1577645..1579147hypothetical protein
LOC_Os01g03780NANA1+1582793..1588757retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006308biological_processDNA catabolism
GO:0048443biological_processstamen development
GO:0000014molecular_functionsingle-stranded DNA specific endodeoxyribonuclease activity
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
GO:0016891molecular_functionendoribonuclease activity, producing 5'-phosphomonoesters
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53305.1.S1_at--514--2931Chr01:1560321..1560344 (24 bp)
AAGGAAGACTGTTCTCCACCATGTT
LOC_Os01g03740
Os.53305.1.S1_at--449--911Chr01:1560099..1560123 (25 bp)
AGGCGTGGCTGAATTTGTCGATGCA
LOC_Os01g03740
Os.53305.1.S1_at--204--611Chr01:1559840..1559953 (25 bp)
ATGCCCAGACACGTATGCATCTGAG
LOC_Os01g03740
Os.53305.1.S1_at--478--3531Chr01:1559823..1559847 (25 bp)
CATCTGAGAGCATCGCTGCAGCATG
LOC_Os01g03740
Os.53305.1.S1_at--301--3851Chr01:1559808..1559832 (25 bp)
CTGCAGCATGCGACTGGGCGTACAA
LOC_Os01g03740
Os.53305.1.S1_at--59--6591Chr01:1559633..1559657 (25 bp)
GATTGCCGGTTGTGAATCTCAGGCT
LOC_Os01g03740
Os.53305.1.S1_at--976--3051Chr01:1559619..1559643 (25 bp)
AATCTCAGGCTAGCGCAAGGCGGCG
LOC_Os01g03740
Os.53305.1.S1_at--1116--2931Chr01:1559603..1559627 (25 bp)
AAGGCGGCGTCAGATTAGCTGCCAC
LOC_Os01g03740
Os.53305.1.S1_at--868--6551Chr01:1559591..1559615 (25 bp)
GATTAGCTGCCACTCTGAACAGAAT
LOC_Os01g03740
Os.53305.1.S1_at--901--9871Chr01:1559540..1559564 (25 bp)
TACATCAGACAGTTCTCTCTCGAAG
LOC_Os01g03740
Os.53305.1.S1_at--745--171Chr01:1559505..1559529 (25 bp)
ATTTTCTCTGTTTTGCTGTGTGCCA
LOC_Os01g03740
Target Sequence 
AAGGAAGACTGTTCTCCACCATGTTTGGGATGACAACATCATCAAAACGGCAGAAAACGACTACTATGGGGAAGGCGTGG
CTGAATTTGTCGATGCACTGATGCAGAATATAACGGGAGAATGGTCACAACGAGTGCCAGGATGGGAAGAATGCAGCAAG
AACCAGACCACATGCCCAGACACGTATGCATCTGAGAGCATCGCTGCAGCATGCGACTGGGCGTACAAGGACGTGACAGA
AGATTCACTCCTGGAAGATGCATATTTCGGGAGCAGATTGCCGGTTGTGAATCTCAGGCTAGCGCAAGGCGGCGTCAGAT
TAGCTGCCACTCTGAACAGAATATTCAGTTAAAGGAAGACGAACTGCATACATCAGACAGTTCTCTCTCGAAGGAAGATT
TTTATTTTCTCTGTTTTGCTGTGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis