Browse Element(s) Details


Os.34778.1.S1_at

Description gb:AK070177.1
DB_XREF= gi:32980201
TID=Os.34778.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mannose-6-phosphate isomerase (P0409B08.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043B18, full insert sequence.
FL= gb:AK070177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0371011/11mannose-6-phosphate isomerase, class I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed
LOC_Os01g03720Os.31381.1.S1_at11/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03720Os.57514.1.S1_x_at1/111+1546043..1547813Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03740Os.53305.1.S1_at11/111+1559420..1563356S1/P1 Nuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004476molecular_functionmannose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34778.1.S1_at--467--6711Chr01:1535820..1535844 (25 bp)
GTTCGAAGTTGACTGCTGCTCACTA
LOC_Os01g03710
Os.34778.1.S1_at--479--8671Chr01:1535862..1535886 (25 bp)
TGTGATATCCCCAGTGTCAGGTCCA
LOC_Os01g03710
Os.34778.1.S1_at--193--931Chr01:1535880..1535904 (25 bp)
AGGTCCATCCGTCTACCTAGTGATG
LOC_Os01g03710
Os.34778.1.S1_at--868--6031Chr01:1535917..1535941 (25 bp)
GAGATCCAGGTAGATTCCATGCCAA
LOC_Os01g03710
Os.34778.1.S1_at--331--9411Chr01:1535975..1535999 (25 bp)
TCGTGCCAGCATACACCGAGGTTAA
LOC_Os01g03710
Os.34778.1.S1_at--915--7791Chr01:1536013..1536037 (25 bp)
GGTCCTGAGTGCATGCAGCTGTACA
LOC_Os01g03710
Os.34778.1.S1_at--419--1351Chr01:1536086..1536110 (25 bp)
AGAGTTCCACACACAATTGCTGTAG
LOC_Os01g03710
Os.34778.1.S1_at--664--7111Chr01:1536203..1536227 (25 bp)
GTCAGGTTCCTTCATATCTTGATTA
LOC_Os01g03710
Os.34778.1.S1_at--595--2771Chr01:1536240..1536264 (25 bp)
AAGAGGTCTATACCATAGCGTTCCT
LOC_Os01g03710
Os.34778.1.S1_at--232--3911Chr01:1536359..1536383 (25 bp)
CTGGTCTCAAGCTTTGACACCGAAT
LOC_Os01g03710
Os.34778.1.S1_at--546--5591Chr01:1536391..1536415 (25 bp)
GAAATACTTACAGACATGCTCCATG
LOC_Os01g03710
Target Sequence 
GTTCGAAGTTGACTGCTGCTCACTACCACCAGGCGAACTGGTTGTGATATCCCCAGTGTCAGGTCCATCCGTCTACCTAG
TGATGGCCGGGGAANGCGAGATCCAGGTAGATTCCATGCCAAATGGTGAAAAGTCTAAACAAGGTGATGTTTTCTTCGTG
CCAGCATACACCGAGGTTAAGTTCTCTGCCTCTGGTCCTGAGTGCATGCAGCTGTACAGGGCTGGGGTCAATAGCAGATT
CTTCAATTAATTTAGTGACTGCTGAAAGAGTTCCACACACAATTGCTGTAGGTAAAAGGTCAGTGCTTACAAAATACAAG
TGAAATGATATGACTAGTTAGCAAAAGTTACCATATGTACTGTATAGGTCAACAAAAGAATAAGTCAGGTTCCTTCATAT
CTTGATTATTTGTTCTTCCAAAGAGGTCTATACCATAGCGTTCCTCACGCATCCAGATCCATCTGAATGGAGAGGATTAC
AGAGAATAACTTTCAGCCATTCTATTCTATTACATTGTAGTTCAGAACTAAAATGTGAACTGGTCTCAAGCTTTGACACC
GAATATAGTTGGAAATACTTACAGACATGCTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis