Browse Element(s) Details


Os.20305.1.S1_at

Description gb:AK106870.1
DB_XREF= gi:32992079
TID=Os.20305.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20305 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative reductase (P0409B08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D07, full insert sequence.
FL= gb:AK106870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0367011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g03710Os.34778.1.S1_at11/111+1530937..1536422mannose-6-phosphate isomerase, class I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20305.1.S1_at--1144--9091Chr01:1510849..1510873 (25 bp)
TGCTCGTGCCACGTGGCGCACTGGT
LOC_Os01g03670
Os.20305.1.S1_at--974--9131Chr01:1510930..1510954 (25 bp)
TGCGGCAGCCACAAGGGAGACGACA
LOC_Os01g03670
Os.20305.1.S1_at--73--1071Chr01:1510943..1510967 (25 bp)
AGGGAGACGACAGGGCCCACAAGAT
LOC_Os01g03670
Os.20305.1.S1_at--589--3211Chr01:1510977..1511001 (25 bp)
CAAGATCAGGGCTCTCGGCTTCCCG
LOC_Os01g03670
Os.20305.1.S1_at--696--10111Chr01:1511087..1511111 (25 bp)
TATGATCCACACAATTAAGCTGCTT
LOC_Os01g03670
Os.20305.1.S1_at--985--10471Chr01:1511140..1511164 (25 bp)
TTAAGGATCGGAATCACGTAGTACC
LOC_Os01g03670
Os.20305.1.S1_at--790--8211Chr01:1511149..1511173 (25 bp)
GGAATCACGTAGTACCGATCATATA
LOC_Os01g03670
Os.20305.1.S1_at--823--6431Chr01:1511165..1511189 (25 bp)
GATCATATATATGTTCATCTCGAAA
LOC_Os01g03670
Os.20305.1.S1_at--874--9591Chr01:1511179..1511203 (25 bp)
TCATCTCGAAATTAACTGCAAGTGT
LOC_Os01g03670
Os.20305.1.S1_at--172--6031Chr01:1511204..1511228 (25 bp)
GAGATCGAGAATACACTAATACAGT
LOC_Os01g03670
Os.20305.1.S1_at--997--7291Chr01:1511227..1511251 (25 bp)
GTGCTAATATATACTGATCAGTCGC
LOC_Os01g03670
Target Sequence 
TGCTCGTGCCACGTGGCGCACTGGTCGGAGATCGTGGGGTCGCTGAGGGAGAGGTACCCGGGGTACCCGATCCCCGCGGA
GTGCGGCAGCCACAAGGGAGACGACAGGGCCCACAAGATGGACACCGCCAAGATCAGGGCTCTCGGCTTCCCGCCATTCC
TCTCCGTGCAGCAGATGTTCGACGACTGCATCAAGAGCTTCCAGGACAAGGGCCTCCTTCCTCCTCACGNCTTGATTCAT
ATGATCCACACAATTAAGCTGCTTGATTAATTAACTAATTAATCTAATATTATTAAGGATCGGAATCACGTAGTACCGAT
CATATATATGTTCATCTCGAAATTAACTGCAAGTGTGAGATCGAGAATACACTAATACAGTGCTAATATATACTGATCAG
TCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20305.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis