Browse Element(s) Details


Os.18067.1.S1_at

Description gb:AK073556.1
DB_XREF= gi:32983579
TID=Os.18067.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18067 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046O13, full insert sequence.
FL= gb:AK073556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1208011/11Protein kinase domain containing protein, expressed
LOC_Os01g036301/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12040NANA4+6586741..6592739retrotransposon protein, putative, unclassified
LOC_Os04g12050OsAffx.3772.1.S1_at11/114+6602237..6603133hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_x_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_x_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12080Os.18067.1.S1_at11/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12080OsAffx.20742.3.S1_x_at1/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12090Os.15852.1.A2_at2/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090Os.46785.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.442.1.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.30226.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12100NANA4+6637647..6638466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12110OsAffx.25993.1.S1_at11/114+6639791..6641675hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005507molecular_functioncopper ion binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18067.1.S1_at--878--2951Chr04:6618253..6618277 (25 bp)
AATGGAGGACACGATCCCTAGCTGA
LOC_Os04g12080
Os.18067.1.S1_at--721--6371Chr04:6618265..6618289 (25 bp)
GATCCCTAGCTGACGCAGTGGACGC
LOC_Os04g12080
Os.18067.1.S1_at--571--7531Chr04:6618298..6618322 (25 bp)
GTGGCCGATACCCTGAAAACGAGGT
LOC_Os04g12080
Os.18067.1.S1_at--1124--1512Chr04:6618408..6618432 (25 bp)
AGCAGCAATTCCACGTCGCTGCAGA
LOC_Os04g12080
Os.18067.1.S1_at--316--9051Chr04:6618427..6618451 (25 bp)
TGCAGACTCCTTCTAAGCCGGCGTT
LOC_Os04g12080
Os.18067.1.S1_at--60--10571Chr04:6618453..6618477 (25 bp)
TTCTTCGGCTCTGGCAGCATCGCAA
LOC_Os04g12080
Os.18067.1.S1_at--298--7531Chr04:6618493..6618517 (25 bp)
GTGGACATGCATTTTTCGGTGGCCG
LOC_Os04g12080
Os.18067.1.S1_at--885--5331Chr04:6618525..6618549 (25 bp)
GAAGTTGCGGCCATCAGCAGTAACA
LOC_Os04g12080
Os.18067.1.S1_at--1059--7031Chr04:6618544..6618568 (25 bp)
GTAACAAGATGTCCAGTAACCCCGT
LOC_Os04g12080
Os.18067.1.S1_at--609--1171Chr04:6618558..6618582 (25 bp)
AGTAACCCCGTTTCAGAGAATGAGG
LOC_Os04g12080
Os.18067.1.S1_at--758--7091Chr04:6618582..6618606 (25 bp)
GTCACGATTTCAGAGCTTCAACCGA
LOC_Os04g12080
Target Sequence 
AATGGAGGACACGATCCCTAGCTGACGCAGTGGACGCGTCGTTGGGTGGCCGATACCCTGAAAACGAGGTCTTCAGCTGC
GTGCAGATTGGGCTACTGTGTGTCCAAGAGAATCCAGCCGACAGGCCGGACATTTCAGCTGTGGTGCTAATGNTGAGCAG
CAATTCCACGTCGCTGCAGACTCCTTCTAAGCCGGCGTTCTTCTTCGGCTCTGGCAGCATCGCAANCTTGGATGCTGCTG
GTGGACATGCATTTTTCGGTGGCCGGGGTTCAGAAGTTGCGGCCATCAGCAGTAACAAGATGTCCAGTAACCCCGTTTCA
GAGAATGAGGTCACGATTTCAGAGCTTCAACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis