Browse Element(s) Details


Os.15852.1.A2_at

Description gb:BX929165
DB_XREF= gi:41884334
DB_XREF=BX929165
CLONE=y775g11p3
TID=Os.15852.1
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative anthocyanidin-3-glucoside rhamnosyltransferase (OSJNBa0049K09.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g120902/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12060OsAffx.3773.1.S1_x_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_x_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12080Os.18067.1.S1_at11/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12080OsAffx.20742.3.S1_x_at1/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12090Os.15852.1.A2_at2/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090Os.46785.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.442.1.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.30226.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12100NANA4+6637647..6638466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12110OsAffx.25993.1.S1_at11/114+6639791..6641675hypothetical protein
LOC_Os04g12120NANA4+6644741..6648577transposon protein, putative, unclassified
LOC_Os04g12130Os.46785.2.S1_x_at2/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.442.1.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.30226.2.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15852.1.A2_at--54--9111Chr10:1390435..1390459 (25 bp)
TGCTCCCACTCGTAGCATGGCATGT
NONE
Os.15852.1.A2_at--636--10011Chr10:1390423..1390447 (25 bp)
TAGCATGGCATGTCCATCCGGCGTT
NONE
Os.15852.1.A2_at--431--4511Chr10:1390388..1390412 (25 bp)
GCCGAGCACCTCGAACATGGAGGCG
NONE
Os.15852.1.A2_at--781--871Chr10:1390342..1390366 (25 bp)
ATGGCCCATCCGACCATCATGGAGG
NONE
Os.15852.1.A2_at--267--3792Chr06:5908090..5908114 (25 bp)
CTCGGGAGAAGCATCGCGCATGGCA
NONE
Os.15852.1.A2_at--822--5392Chr06:5908097..5908121 (25 bp)
GAAGCATCGCGCATGGCACCTTGTG
NONE
Os.15852.1.A2_at--192--5091Chr10:1390293..1390317 (25 bp)
GCACCTTGTGCTGTAGCGCGACGAG
NONE
Os.15852.1.A2_at--778--3992Chr06:5908155..5908179 (25 bp)
CGTGTCGGCGATGATCCAATCAGGC
NONE
Os.15852.1.A2_at--854--6292Chr06:5908164..5908512 (25 bp)
GATGATCCAATCAGGCCTCCTCTCG
NONE
Os.15852.1.A2_at--452--6133Chr06:5908233..5908257 (25 bp)
GAGGGCGTCGAAGGCCTTCCAGAGG
NONE
Os.15852.1.A2_at--551--5453Chr06:5908404..5908428 (25 bp)
GAACGCGAGCCATGGGAAGATCACA
NONE
Target Sequence 
TGCTCCCACTCGTAGCATGGCATGTCCATCCGGCGTTCTTCTACGGCGCCGAGCACCTCGAACATGGAGGCGCCGGCTGG
CTCCGACGACCGGATGGCCCATCCGACCATCATGGAGGCGCTCGGGAGAAGCATCGCGCATGGCACCTTGTGCTGTAGCG
CGACGAGGGGCGCCCAGTGGTGGAACGTGTCGGCGATGATCCAATCAGGCCTCCTCTCGCCGTCGCCGGCGTCGCGGCAC
GCCGCGCCCAAGAACTCCGCGAACGGCGCGGCGAGGGCGTCGAAGGCCTTCCAGAGGAGGTCGAACTTGCCGGAGGGGAC
ATCGTTGGTGCACTCGGCGCCGTCGGGGAGGCCGTCGACGCGCGGGAGCGGCAGCGCCACGAGGTCGACGCGCGCCGCGG
CGGCGGGGCGCACCGGCGGGAGGCGCGCGATGTTGCGCGGCGTGGAGACGAAGGACACGCGGTGGCCGCGCGACGCCACG
CGCTCCGCGAGCTCGAGGTAAGGGAGCAGGTGGCCGAACGCGAGCCATGGGAAGATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15852.1.A2_at     

Putative homologies in rice

Putative homologies in arabidopsis