Browse Element(s) Details


OsAffx.3773.1.S1_at

Description tigr:9632.m01081
TID=OsAffx.3773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1206011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12030Os.31312.2.S1_x_at5/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12030Os.31312.5.S1_x_at4/114+6582691..6585950retrotransposon protein, putative, unclassified
LOC_Os04g12040NANA4+6586741..6592739retrotransposon protein, putative, unclassified
LOC_Os04g12050OsAffx.3772.1.S1_at11/114+6602237..6603133hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_x_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_x_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12080Os.18067.1.S1_at11/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12080OsAffx.20742.3.S1_x_at1/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12090Os.15852.1.A2_at2/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090Os.46785.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.442.1.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.30226.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3773.1.S1_at--23--3731Chr04:6610511..6610535 (25 bp)
CTACGAGAACAGCTACCACGCGGAG
LOC_Os04g12060
OsAffx.3773.1.S1_at--483--1871Chr04:6610513..6610537 (25 bp)
ACGAGAACAGCTACCACGCGGAGCT
LOC_Os04g12060
OsAffx.3773.1.S1_at--312--3771Chr04:6610536..6610560 (25 bp)
CTCTACAACGTCAACAACGTCACCG
LOC_Os04g12060
OsAffx.3773.1.S1_at--493--9951Chr04:6610587..6610611 (25 bp)
TACGCGCTGATGAGCCGCCTCAGGG
LOC_Os04g12060
OsAffx.3773.1.S1_at--857--6011Chr04:6610651..6610675 (25 bp)
GAGAGGCGGTGTACGACCCCGGCGC
LOC_Os04g12060
OsAffx.3773.1.S1_at--67--3911Chr04:6610698..6610722 (25 bp)
CTGGTGCAGTGTATGAGGGACCGCA
LOC_Os04g12060
OsAffx.3773.1.S1_at--861--3551Chr04:6610811..6610835 (25 bp)
CTACAACTACTACGTACGCGTCGAA
LOC_Os04g12060
OsAffx.3773.1.S1_at--634--3231Chr04:6610814..6610838 (25 bp)
CAACTACTACGTACGCGTCGAAATA
LOC_Os04g12060
OsAffx.3773.1.S1_at--405--2011Chr04:6610819..6610843 (25 bp)
ACTACGTACGCGTCGAAATATACAC
LOC_Os04g12060
OsAffx.3773.1.S1_at--835--3391Chr04:6610898..6610922 (25 bp)
CAGCTCGAAGCCGTCTATCGGAGAA
LOC_Os04g12060
OsAffx.3773.1.S1_at--769--4091Chr04:6610903..6610927 (25 bp)
CGAAGCCGTCTATCGGAGAAGGGCA
LOC_Os04g12060
Target Sequence 
CTACGAGAACAGCTACCACGCGGAGCTCTACAACGTCAACAACGTCACCGACAAGGTCGGCTTCGAGAGGACGTACTACG
CGCTGATGAGCCGCCTCAGGGCGCGGGCCGCGAACGACACGGCGCGGATGTTCGCCGCGGGAGAGGCGGTGTACGACCCC
GGCGCCGACAACGGGACGATGTACGGGCTGGTGCAGTGTATGAGGGACCGCACGGCGGCGGAGTGCGACCGGTGCTTGAA
CGACTCGGTGCAGCAGCTGCCGAGCTGCTGCTGGGGACACCAGGGTGGGGTGGTGCTCGGCTACAACTACTACGTACGCG
TCGAAATATACACCTACTACGATCTCACCGTCGATGCGCAGCCGCCGTCTCCCGGCCCGTCGGCCTCCAGCTCGAAGCCG
TCTATCGGAGAAGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis