Browse Element(s) Details


OsAffx.25992.1.S1_at

Description tigr:9632.m01082
TID=OsAffx.25992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1207011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12040NANA4+6586741..6592739retrotransposon protein, putative, unclassified
LOC_Os04g12050OsAffx.3772.1.S1_at11/114+6602237..6603133hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_x_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12060OsAffx.3773.1.S1_at11/114+6607219..6610973hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_x_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12070OsAffx.25992.1.S1_at11/114+6612348..6612695hypothetical protein
LOC_Os04g12080Os.18067.1.S1_at11/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12080OsAffx.20742.3.S1_x_at1/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12090Os.15852.1.A2_at2/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090Os.46785.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.442.1.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.30226.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12100NANA4+6637647..6638466retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25992.1.S1_at--252--7231Chr04:6612632..6612656 (25 bp)
GTCGCGGGCGAACTCCACGAAGAAG
LOC_Os04g12070
OsAffx.25992.1.S1_at--662--1451Chr04:6612585..6612609 (25 bp)
AGAAGAGGAGGTCCAAGTCCGCCTC
LOC_Os04g12070
OsAffx.25992.1.S1_at--357--1331Chr04:6612582..6612606 (25 bp)
AGAGGAGGTCCAAGTCCGCCTCCGA
LOC_Os04g12070
OsAffx.25992.1.S1_at--992--7211Chr04:6612536..6612560 (25 bp)
GTCGAGCATCCGTCGCTGCCGAGAG
LOC_Os04g12070
OsAffx.25992.1.S1_at--1107--7191Chr04:6612525..6612549 (25 bp)
GTCGCTGCCGAGAGGGACCAAGTTC
LOC_Os04g12070
OsAffx.25992.1.S1_at--28--4771Chr04:6612522..6612546 (25 bp)
GCTGCCGAGAGGGACCAAGTTCGTC
LOC_Os04g12070
OsAffx.25992.1.S1_at--532--4511Chr04:6612519..6612543 (25 bp)
GCCGAGAGGGACCAAGTTCGTCATC
LOC_Os04g12070
OsAffx.25992.1.S1_at--913--4071Chr04:6612517..6612541 (25 bp)
CGAGAGGGACCAAGTTCGTCATCAT
LOC_Os04g12070
OsAffx.25992.1.S1_at--166--7131Chr04:6612500..6612524 (25 bp)
GTCATCATCGAGCATCCATCGCTGC
LOC_Os04g12070
OsAffx.25992.1.S1_at--1147--8011Chr04:6612461..6612485 (25 bp)
GGAGGGTTGGCCGCGCATTCCGGCG
LOC_Os04g12070
OsAffx.25992.1.S1_at--175--8371Chr04:6612418..6612442 (25 bp)
GGCGGGAGAGTTGCCGCTCGCTCCT
LOC_Os04g12070
Target Sequence
GTCGCGGGCGAACTCCACGAAGAAGATGGAAGCGGCGGCGGCGCACAAGAAGAGGAGGTCCAAGTCCGCCTCCGACTGAG
CTCCATGCCCGCCACCGTCGAGCATCCGTCGCTGCCGAGAGGGACCAAGTTCGTCATCATCGAGCATCCATCGCTGCCGA
GGAGGGTAGGGGGAGGGTTGGCCGCGCATTCCGGCGCCGACGAGGAGAGGAAGGGGCGGGAGAGTTGCCGCTCGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis