Browse Element(s) Details


OsAffx.25993.1.S1_at

Description tigr:9632.m01086
TID=OsAffx.25993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1211011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12080Os.18067.1.S1_at11/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12080OsAffx.20742.3.S1_x_at1/114+6614014..6618847Protein kinase domain containing protein, expressed
LOC_Os04g12090Os.15852.1.A2_at2/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090Os.46785.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.442.1.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12090OsAffx.30226.2.S1_x_at1/114+6634607..6637289retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12100NANA4+6637647..6638466retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12110OsAffx.25993.1.S1_at11/114+6639791..6641675hypothetical protein
LOC_Os04g12120NANA4+6644741..6648577transposon protein, putative, unclassified
LOC_Os04g12130Os.46785.2.S1_x_at2/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.442.1.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12130OsAffx.30226.2.S1_x_at1/114+6657898..6661798retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g12140OsAffx.25995.1.S1_at11/114+6663496..6673025expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25993.1.S1_at--496--931Chr04:6640356..6640380 (25 bp)
AGGAAATCGGGTCTCAACCTGGCGT
LOC_Os04g12110
OsAffx.25993.1.S1_at--1001--6751Chr04:6640325..6640349 (25 bp)
GTTCAAAGCTCTCGGCCTGGACGGC
LOC_Os04g12110
OsAffx.25993.1.S1_at--508--7951Chr04:6640262..6640286 (25 bp)
GGATAGTATCATGGCGTGGCATCTC
LOC_Os04g12110
OsAffx.25993.1.S1_at--875--1111Chr04:6640234..6640258 (25 bp)
AGTGACATCTGCCTCTTCAGTGACC
LOC_Os04g12110
OsAffx.25993.1.S1_at--250--7711Chr04:6640182..6640206 (25 bp)
GGGTGGCGGTTCTGTCCAACTACAT
LOC_Os04g12110
OsAffx.25993.1.S1_at--1104--6811Chr04:6640070..6640094 (25 bp)
GTTTATGCATCGAAAGGGCCGCGCT
LOC_Os04g12110
OsAffx.25993.1.S1_at--1150--5671Chr04:6640033..6640057 (25 bp)
GACTTGTTCGTGTGGGCTCTTCGCA
LOC_Os04g12110
OsAffx.25993.1.S1_at--691--4571Chr04:6639970..6639994 (25 bp)
GCGCAGTACGACACCGGAGTAAGAC
LOC_Os04g12110
OsAffx.25993.1.S1_at--201--8011Chr04:6639955..6639979 (25 bp)
GGAGTAAGACTTGCCGCCGTGCTCT
LOC_Os04g12110
OsAffx.25993.1.S1_at--27--4371Chr04:6639929..6639953 (25 bp)
CCACCGGTTGGACAGGCTTGATATC
LOC_Os04g12110
OsAffx.25993.1.S1_at--1023--631Chr04:6639884..6640153 (25 bp)
ATGCTTGTCTTACGTTGCTTGCAAC
LOC_Os04g12110
Target Sequence 
AGGAAATCGGGTCTCAACCTGGCGTGCGCGCGTTCAAAGCTCTCGGCCTGGACGGCAGCCTCGGCTGGAGGACCATCCAA
GACATCGGCTTCGAGGATAGTATCATGGCGTGGCATCTCGCCAGTGACATCTGCCTCTTCAGTGACCGCAGCAACAAGCT
GGATTTGCACGAGGGGGTGGCGGTTCTGTCCAACTACATGATGTTCCTCCTCGTGCACCGCCGGTACATGCTGCCAGGCC
CCGTGCGTCGCACGCGGTACGAGCAGGTGCGCGACGATCTCAACAAGTTTATGCATCGAAAGGGCCGCGCTCGCTCGCCG
CAGGACTTGTTCGTGTGGGCTCTTCGCAGGGGCCTCCATGATCATCTCAACTCCGACGATCCTCCGGCGCAGTACGACAC
CGGAGTAAGACTTGCCGCCGTGCTCTACCACCGGTTGGACAGGCTTGATATCATCTTTGGGGTGTGGGTGGAGATGCTTG
TCTTACGTTGCTTGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis