Browse Element(s) Details

Os.845.2.A1_at

Description

gb:NM_184199.1
DB_XREF= gi:34895489
GEN=P0409B08.15
TID=Os.845.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0409B08.15 (P0409B08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0409B08.15 (P0409B08.15), mRNA.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g03650	5/11	sufB/sufD domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g03620	Os.29768.1.S1_at	11/11	1	+	1483202..1485699	Multicopper oxidase family protein, expressed
LOC_Os01g03630	Os.31788.1.S1_at	11/11	1	+	1487296..1489948	Multicopper oxidase family protein, expressed
LOC_Os01g03630	Os.18067.1.S1_at	1/11	1	+	1487296..1489948	Multicopper oxidase family protein, expressed
LOC_Os01g03640	OsAffx.10896.1.S1_at	11/11	1	+	1494345..1497143	Multicopper oxidase family protein, expressed
LOC_Os01g03650	Os.845.1.A1_at	10/11	1	+	1500813..1504859	sufB/sufD domain containing protein, expressed
LOC_Os01g03650	Os.845.2.A1_x_at	9/11	1	+	1500813..1504859	sufB/sufD domain containing protein, expressed
LOC_Os01g03650	Os.845.2.A1_at	5/11	1	+	1500813..1504859	sufB/sufD domain containing protein, expressed
LOC_Os01g03660	Os.18008.1.S1_at	10/11	1	+	1505037..1509554	Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660	OsAffx.23102.1.S1_at	10/11	1	+	1505037..1509554	Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670	Os.20305.1.S1_at	11/11	1	+	1509940..1511264	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680	Os.5045.1.S1_at	11/11	1	+	1512639..1513529	Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690	Os.53501.1.S1_at	11/11	1	+	1515049..1518438	serine/threonine-protein kinase receptor precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006810	biological_process	transport
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0010027	biological_process	thylakoid membrane organization and biogenesis
GO:0009536	cellular_component	plastid
GO:0005215	molecular_function	transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.845.2.A1_at--398--1011	1	NONE	TATGAGTTTGTTGAGACTCCTAATA	NONE
Os.845.2.A1_at--336--69	1	NONE	ATGAGTTTGTTGAGACTCCTAATAC	NONE
Os.845.2.A1_at--686--607	1	NONE	GAGTTTGTTGAGACTCCTAATACAT	NONE
Os.845.2.A1_at--112--121	1	NONE	AGTTTGTTGAGACTCCTAATACATT	NONE
Os.845.2.A1_at--1154--685	1	NONE	GTTTGTTGAGACTCCTAATACATTG	NONE
Os.845.2.A1_at--598--1079	1	NONE	TTGTTGAGACTCCTAATACATTGAT	NONE
Os.845.2.A1_at--169--429	2	Chr07:26430024..26430048 (25 bp)	CCTAATACATTGATGTCCTTGATTC	NONE
Os.845.2.A1_at--781--207	1	Chr01:1501376..1501400 (25 bp)	ACATTGATGTCCTTGATTCACAGAT	LOC_Os01g03650
Os.845.2.A1_at--142--361	2	Chr07:26430021..26430041 (21 bp)	CATTGATGTCCTTGATTCACAGATA	NONE
Os.845.2.A1_at--767--5	2	Chr07:26430021..26430040 (20 bp)	ATTGATGTCCTTGATTCACAGATAT	NONE
Os.845.2.A1_at--904--1077	1	Chr01:1501373..1501397 (25 bp)	TTGATGTCCTTGATTCACAGATATG	LOC_Os01g03650

Target Sequence

TATGAGTTTGTTGAGACTCCTAATACATTGATGTCCTTGATTCACAGATATG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis