Browse Element(s) Details


Os.845.2.A1_x_at

Description gb:NM_184199.1
DB_XREF= gi:34895489
GEN=P0409B08.15
TID=Os.845.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0409B08.15 (P0409B08.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0409B08.15 (P0409B08.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g036509/11sufB/sufD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0009536cellular_componentplastid
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.845.2.A1_x_at--764--2891Chr01:1504011..1504035 (25 bp)
AAGGTGGTGCATTCCTATGTGCAGC
LOC_Os01g03650
Os.845.2.A1_x_at--1135--771Chr01:1503995..1504019 (25 bp)
ATGTGCAGCAGCAGTCGTTTGCGGC
LOC_Os01g03650
Os.845.2.A1_x_at--749--10711Chr01:1503977..1504001 (25 bp)
TTGCGGCTGCGCATACCAAGTGGAC
LOC_Os01g03650
Os.845.2.A1_x_at--133--1771NONE
ACCGTCGTCCAGCAGAATACATCTA
NONE
Os.845.2.A1_x_at--1155--6851NONE
GTTTGTTGAGACTCCTAATACATTG
NONE
Os.845.2.A1_x_at--782--2071Chr01:1501376..1501400 (25 bp)
ACATTGATGTCCTTGATTCACAGAT
LOC_Os01g03650
Os.845.2.A1_x_at--710--1411Chr01:1501326..1501350 (25 bp)
AGAAACCAAGTGTCTTCTCCTGTCA
LOC_Os01g03650
Os.845.2.A1_x_at--2--851Chr01:1501237..1501261 (25 bp)
ATGGAGCTGCCATCAGTGGTGAACA
LOC_Os01g03650
Os.845.2.A1_x_at--294--3011Chr01:1501205..1501229 (25 bp)
AATGCGATCTACTTCTTGCAAGCAA
LOC_Os01g03650
Os.845.2.A1_x_at--716--2331Chr01:1501164..1501188 (25 bp)
AACAGCGGCGGATGCCCTAAATTTC
LOC_Os01g03650
Os.845.2.A1_x_at--1045--9831Chr01:1501147..1501171 (25 bp)
TAAATTTCGCCTTTGGAGCCCATGT
LOC_Os01g03650
Target Sequence 
AAGGTGGTGCATTCCTATGTGCAGCAGCAGTCGTTTGCGGCTGCGCATACCAAGTGGACCGTCGTCCAGCAGAATACATC
TAGCAACTATGAGTTTGTTGAGACTCCTAATACATTGATGTCCTTGATTCACAGATATGCACAACAAACTGACGCAGGGC
AAGAAACCAAGTGTCTTCTCCTGTCATCGAAGGCACTTGTTAATGTGAAGCCAAACCTTCAGATCATTGCTGATGATGTC
AAATGTACACATGGAGCTGCCATCAGTGGTGAACATGATCCAAATGCGATCTACTTCTTGCAAGCAAGAGGCATCGATGC
TAAAACAGCGGCGGATGCCCTAAATTTCGCCTTTGGAGCCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.845.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis