Browse Element(s) Details


OsAffx.10896.1.S1_at

Description tigr:9629.m00280
TID=OsAffx.10896.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0364011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g03610OsAffx.17567.1.S1_x_at1/111+1471189..1474669retrotransposon protein, putative, unclassified
LOC_Os01g03620Os.29768.1.S1_at11/111+1483202..1485699Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.31788.1.S1_at11/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03630Os.18067.1.S1_at1/111+1487296..1489948Multicopper oxidase family protein, expressed
LOC_Os01g03640OsAffx.10896.1.S1_at11/111+1494345..1497143Multicopper oxidase family protein, expressed
LOC_Os01g03650Os.845.1.A1_at10/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_x_at9/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03650Os.845.2.A1_at5/111+1500813..1504859sufB/sufD domain containing protein, expressed
LOC_Os01g03660Os.18008.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03660OsAffx.23102.1.S1_at10/111+1505037..1509554Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g03670Os.20305.1.S1_at11/111+1509940..1511264NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g03680Os.5045.1.S1_at11/111+1512639..1513529Bowman-Birk serine protease inhibitor family protein, expressed
LOC_Os01g03690Os.53501.1.S1_at11/111+1515049..1518438serine/threonine-protein kinase receptor precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10896.1.S1_at--871--1851Chr01:1494984..1495008 (25 bp)
ACGACATGCCGGACAAATCCAAGGT
LOC_Os01g03640
OsAffx.10896.1.S1_at--463--5611Chr01:1494973..1494997 (25 bp)
GACAAATCCAAGGTGCCGGAGCACG
LOC_Os01g03640
OsAffx.10896.1.S1_at--614--8931Chr01:1494717..1494741 (25 bp)
TGACGAAGATCGAGGGATTCCAGGT
LOC_Os01g03640
OsAffx.10896.1.S1_at--254--6591Chr01:1494702..1494726 (25 bp)
GATTCCAGGTGTTCAAGGACTGCAT
LOC_Os01g03640
OsAffx.10896.1.S1_at--764--7751Chr01:1494695..1494719 (25 bp)
GGTGTTCAAGGACTGCATGATCAAA
LOC_Os01g03640
OsAffx.10896.1.S1_at--461--8111Chr01:1494686..1494710 (25 bp)
GGACTGCATGATCAAAAACAACAAC
LOC_Os01g03640
OsAffx.10896.1.S1_at--1047--1431Chr01:1494588..1494612 (25 bp)
AGAACGCGGTGAAGATTCCGCCGGA
LOC_Os01g03640
OsAffx.10896.1.S1_at--204--6571Chr01:1494575..1494599 (25 bp)
GATTCCGCCGGAGTTCATGACGTCG
LOC_Os01g03640
OsAffx.10896.1.S1_at--1078--3891Chr01:1494567..1494591 (25 bp)
CGGAGTTCATGACGTCGGTGGTGGT
LOC_Os01g03640
OsAffx.10896.1.S1_at--813--8471Chr01:1494543..1494567 (25 bp)
TGGCGTTCAGGCTTGTCGAGGCCAA
LOC_Os01g03640
OsAffx.10896.1.S1_at--862--1811Chr01:1494501..1494525 (25 bp)
ACGCCACCACCGAGCCGGGATTCGT
LOC_Os01g03640
Target Sequence 
ACGACATGCCGGACAAATCCAAGGTGCCGGAGCACGGCGTGCCGTACGCGAGCGTGGCGGCGCTCCCGCCGCCGACGACG
ACGAGGTACATCGTCCTGTACGAGAACCAGACCGCGCCGGGGAACCTCTACATCAACGGCCTCCGGCTGGAGGACCCGGT
GACGGAGACGCCCAAGTCCGGCACGACGGAGCTGTGGCAGGTGATCAACCTCACCGGCGACAACCACCCGCTGCACCTCC
ACATTGCCACGTTCCAGGCCATCAAGATGACGAAGATCGAGGGATTCCAGGTGTTCAAGGACTGCATGATCAAAAACAAC
AACACCGCCACGTGCAACCTCGACCAGCACGCCGTCGGGCCCGTCGTGCCGGTGCCGGAGGAGGAGAAGACGTGGAAGAA
CGCGGTGAAGATTCCGCCGGAGTTCATGACGTCGGTGGTGGTGGCGTTCAGGCTTGTCGAGGCCAATCAGCCCTACCCCT
TCGACGCCACCACCGAGCCGGGATTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis