Browse Element(s) Details


Os.51204.1.S1_at

Description gb:AK061568.1
DB_XREF= gi:32971586
TID=Os.51204.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F05, full insert sequence.
FL= gb:AK061568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4238011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42360OsAffx.12454.1.S1_at11/112+25475019..25476086expressed protein
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009653biological_processmorphogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51204.1.S1_at--891--7331Chr02:25492172..25492196 (25 bp)
GTGAATCACGCACAGCAGCATGCAT
LOC_Os02g42380
Os.51204.1.S1_at--822--9471Chr02:25492206..25492230 (25 bp)
TCTGACACGTCTTTCGCTCAATTCA
LOC_Os02g42380
Os.51204.1.S1_at--908--6971Chr02:25492255..25492279 (25 bp)
GTACGCCTTGTTCTTGGGACAGTTC
LOC_Os02g42380
Os.51204.1.S1_at--501--31Chr02:25492283..25492307 (25 bp)
ATTGGAGTGTGCTTCTTCTCTCTAC
LOC_Os02g42380
Os.51204.1.S1_at--702--7511Chr02:25492311..25492335 (25 bp)
GTGGATCGATCGTTTTGCCTTCTTC
LOC_Os02g42380
Os.51204.1.S1_at--790--8691Chr02:25492337..25492361 (25 bp)
TGTGCGGTTCATCAATTGCTCAAGA
LOC_Os02g42380
Os.51204.1.S1_at--82--1291Chr02:25492416..25492440 (25 bp)
AGATCTCATCTTACTCCTACAAATT
LOC_Os02g42380
Os.51204.1.S1_at--221--9231Chr02:25492440..25492464 (25 bp)
TCCAGCGCCGCATGTGTTTGTGTGT
LOC_Os02g42380
Os.51204.1.S1_at--768--8671Chr02:25492458..25492482 (25 bp)
TGTGTGTTTGCCACTTGTTTCCAGC
LOC_Os02g42380
Os.51204.1.S1_at--176--1591Chr02:25492480..25492504 (25 bp)
AGCTCTTGTGCTATGATTCCATGGA
LOC_Os02g42380
Os.51204.1.S1_at--134--10551Chr02:25492522..25492546 (25 bp)
TTCATCTACATCGTTGTCAGACCAA
LOC_Os02g42380
Target Sequence 
GTGAATCACGCACAGCAGCATGCATCTTCCGAGCTCTGACACGTCTTTCGCTCAATTCACCGACGCGTACTGCACTGGCG
TCCGTACGCCTTGTTCTTGGGACAGTTCTTGATTGGAGTGTGCTTCTTCTCTCTACCCCGTGGATCGATCGTTTTGCCTT
CTTCCTGTGCGGTTCATCAATTGCTCAAGATGAAATTAATTGTTGCTGTGGTGTTTAAGCTCAAAACTGTAAATACGAGT
CCTTAGATCTCATCTTACTCCTACAAATTCCAGCGCCGCATGTGTTTGTGTGTTTGCCACTTGTTTCCAGCTCTTGTGCT
ATGATTCCATGGAACTTGTTTCAGTTTAGCTTCATCTACATCGTTGTCAGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis