Browse Element(s) Details


Os.51206.1.S1_at

Description gb:AK061584.1
DB_XREF= gi:32971602
TID=Os.51206.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-312-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-312-B04, full insert sequence.
FL= gb:AK061584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4962011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49570Os.15729.2.S1_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.2.S1_x_at11/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49570Os.15729.1.S1_at4/114+29346856..29351027Glutamate receptor 3.3 precursor, putative, expressed
LOC_Os04g49580Os.10745.1.S1_at10/114+29352529..29358583CBF/Mak21 family protein, expressed
LOC_Os04g49590Os.54732.1.S1_at11/114+29358868..29362046regulatory protein, putative, expressed
LOC_Os04g49600OsAffx.4129.1.S1_at11/114+29362520..29363676hypothetical protein
LOC_Os04g49610Os.9407.1.S1_at11/114+29364754..29366574expressed protein
LOC_Os04g49620Os.51206.1.S1_at11/114+29369164..29371427expressed protein
LOC_Os04g49630OsAffx.14346.1.S1_at10/114+29372531..29374632hypothetical protein
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51206.1.S1_at--751--5811Chr04:29369636..29369660 (25 bp)
GACCCCAGAGAGGTGGAGTCCACTC
LOC_Os04g49620
Os.51206.1.S1_at--284--571Chr04:29369582..29369606 (25 bp)
ATCCTCGCCGGGTGACAACTGACAA
LOC_Os04g49620
Os.51206.1.S1_at--563--6191Chr04:29369539..29369563 (25 bp)
GAGGAAACTCCTCCGGGATTGTGCT
LOC_Os04g49620
Os.51206.1.S1_at--37--6611Chr04:29369523..29369547 (25 bp)
GATTGTGCTGCTCGTTTTCCGGCAA
LOC_Os04g49620
Os.51206.1.S1_at--91--10671Chr04:29369507..29369531 (25 bp)
TTCCGGCAAGCCAAGACCAGATGAT
LOC_Os04g49620
Os.51206.1.S1_at--803--2771Chr04:29369495..29369519 (25 bp)
AAGACCAGATGATCCTCACACCTTA
LOC_Os04g49620
Os.51206.1.S1_at--526--10411Chr04:29369403..29369427 (25 bp)
TTTTGGTGGTGTTTGTTAGCGCCTC
LOC_Os04g49620
Os.51206.1.S1_at--841--10451Chr04:29369388..29369412 (25 bp)
TTAGCGCCTCCCTAATATCGGTGAT
LOC_Os04g49620
Os.51206.1.S1_at--877--1271Chr04:29369334..29369358 (25 bp)
AGATCAGCGCTGGTTATTAGTAGGA
LOC_Os04g49620
Os.51206.1.S1_at--563--8331Chr04:29369303..29369327 (25 bp)
GGCTGACTGCAGCTTTCTGTAATCT
LOC_Os04g49620
Os.51206.1.S1_at--273--10651Chr04:29369216..29369240 (25 bp)
TTCCTACGTGTAGCTGATTACTGTG
LOC_Os04g49620
Target Sequence 
GACCCCAGAGAGGTGGAGTCCACTCCGAGGCCTCCGAAAGCTCGCGCCGGCTCGATCCTCGCCGGGTGACAACTGACAAG
GAGGAGGGACTGAAAGTGAGGAAACTCCTCCGGGATTGTGCTGCTCGTTTTCCGGCAAGCCAAGACCAGATGATCCTCAC
ACCTTACCACCAGAAAACTATCACTTACAAAGTTACATATGGGTTTGTGTTTTTGTTTAAACCCCCTTTGCTCTTTTGGT
GGTGTTTGTTAGCGCCTCCCTAATATCGGTGATCGATGATGTATAGAGACGGATGGAAAGGAAGATCAGCGCTGGTTATT
AGTAGGAGTGACTGGCTGACTGCAGCTTTCTGTAATCTGTGTTATCAAGGGGGGGGGGGGGGGGTTTCCTGACCTTCGTC
TTGGGGGTGTTGTGAATTTTTCCTACGTGTAGCTGATTACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis