Browse Element(s) Details


Os.51291.1.S1_at

Description gb:AK062439.1
DB_XREF= gi:32972457
TID=Os.51291.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-A10, full insert sequence.
FL= gb:AK062439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1398010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13960Os.5133.1.S1_at11/112+7613140..7615367U-box domain containing protein, expressed
LOC_Os02g13970Os.26931.1.S1_a_at11/112+7621905..7627260UOS1, putative, expressed
LOC_Os02g13980Os.51291.1.S1_at10/112+7627395..7628246expressed protein
LOC_Os02g13990Os.11097.1.S1_at11/112+7630870..7635230U2 small nuclear ribonucleoprotein A, putative, expressed
LOC_Os02g14000Os.10246.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14000OsAffx.2605.1.S1_at11/112+7643704..7646133P21-ARC family protein, expressed
LOC_Os02g14010OsAffx.24239.1.S1_at10/112+7648303..7649327hypothetical protein
LOC_Os02g14020NANA2+7650388..7655631hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51291.1.S1_at--888--1631Chr02:7627987..7628011 (25 bp)
AGCGAGTTCGGCTTCGAGTACGAGA
LOC_Os02g13980
Os.51291.1.S1_at--926--4772Chr02:7627734..7627758 (25 bp)
GCTGCTGGTGAGTGACAGTCTGACA
LOC_Os02g13980
Os.51291.1.S1_at--358--6431Chr02:7627687..7627711 (25 bp)
GATCATTAGGCAAAGGACTCATGGA
LOC_Os02g13980
Os.51291.1.S1_at--204--8131Chr02:7627673..7627697 (25 bp)
GGACTCATGGATATGATTCTGCAGT
LOC_Os02g13980
Os.51291.1.S1_at--864--6511Chr02:7627659..7627683 (25 bp)
GATTCTGCAGTTTAGGGAGTTTTTC
LOC_Os02g13980
Os.51291.1.S1_at--1012--8551Chr02:7627612..7627636 (25 bp)
TGGATGTATAATTGCGTTTCACGGA
LOC_Os02g13980
Os.51291.1.S1_at--1134--8031Chr02:7627590..7627614 (25 bp)
GGAGTAGTAATTTCACCTTGCCTTC
LOC_Os02g13980
Os.51291.1.S1_at--1122--6591Chr02:7627492..7627516 (25 bp)
GATTGTAGTGGTGTGTTCACTGATT
LOC_Os02g13980
Os.51291.1.S1_at--59--7851Chr02:7627459..7627483 (25 bp)
GGTAGAAAACCTGATGCTGTGCAAA
LOC_Os02g13980
Os.51291.1.S1_at--334--651Chr02:7627430..7627454 (25 bp)
ATGAATGCTTGTGTTTTAACTGTTC
LOC_Os02g13980
Os.51291.1.S1_at--1009--1091Chr02:7627395..7627419 (25 bp)
AGTGATATGGATGTACCTTGTTTTC
NONE
Target Sequence 
AGCGAGTTCGGCTTCGAGTACGAGAAGAGCGGCCTCTGGTCGCCGCTGGTGGTGCGGCCGGAGGCCCTCGTGCTCGCCGG
CGGCGGGAAGCGCCGGCGCCGGAGCTGGAGGAGGAAGGTGTTTTGCTGCTGGTGAGTGACAGTCTGACATGCATGAAGCA
TGGGGAGCTTTGATCATTAGGCAAAGGACTCATGGATATGATTCTGCAGTTTAGGGAGTTTTTCATGTAATTATGGGAAT
ATTGATTGGATGTATAATTGCGTTTCACGGAGTAGTAATTTCACCTTGCCTTCCTCTTTTTAATTTTGGCTTTGTAACGA
GGAAACATGTAGAAAATTAGTACTCAAATGACTTGTGTGTAGTAGGGATTGTAGTGGTGTGTTCACTGATTTTCAGTTTG
GTAGAAAACCTGATGCTGTGCAAAATATATGAATGCTTGTGTTTTAACTGTTCATTTATTTCTAGTGATATGGATGTACC
TTGTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis