Browse Element(s) Details


Os.51371.1.S1_at

Description gb:AK062664.1
DB_XREF= gi:32972682
TID=Os.51371.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F08, full insert sequence.
FL= gb:AK062664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40360Os.40855.5.S1_x_at11/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40360Os.40360.1.S1_at9/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40360Os.40360.1.S1_x_at6/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40370NANA2+24444311..24444550retrotransposon protein, putative, unclassified
LOC_Os02g40380NANA2+24444914..24445246retrotransposon protein, putative, unclassified
LOC_Os02g40390NANA2+24445884..24452039retrotransposon protein, putative, unclassified
LOC_Os02g40400OsAffx.2926.1.S1_at11/112+24456379..24461846expressed protein
LOC_Os02g40410OsAffx.24660.1.S1_x_at11/112+24465676..24471502expressed protein
LOC_Os02g40410Os.51371.1.S1_at11/112+24465676..24471502expressed protein
LOC_Os02g40420OsAffx.2927.1.S1_at11/112+24477121..24481565expressed protein
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51371.1.S1_at--765--4471Chr02:24465783..24465807 (25 bp)
GCCTGTCAACGATGATATGTCTTTG
LOC_Os02g40410
Os.51371.1.S1_at--164--6511Chr02:24465770..24465794 (25 bp)
GATATGTCTTTGCAAGTTACAACTG
LOC_Os02g40410
Os.51371.1.S1_at--734--6751Chr02:24465755..24465779 (25 bp)
GTTACAACTGATGAATTTCTCCCCT
LOC_Os02g40410
Os.51371.1.S1_at--90--3271Chr02:24465751..24465775 (25 bp)
CAACTGATGAATTTCTCCCCTTTTT
LOC_Os02g40410
Os.51371.1.S1_at--769--7031Chr02:24465724..24465748 (25 bp)
GTACACTGTTTATGTCATTTTACGC
LOC_Os02g40410
Os.51371.1.S1_at--1030--8771Chr02:24465718..24465742 (25 bp)
TGTTTATGTCATTTTACGCCAGAAA
LOC_Os02g40410
Os.51371.1.S1_at--611--10331Chr02:24465706..24465730 (25 bp)
TTTACGCCAGAAACAAATGTGTACT
LOC_Os02g40410
Os.51371.1.S1_at--479--2471Chr02:24465695..24465719 (25 bp)
AACAAATGTGTACTCGCTTCGTCTC
LOC_Os02g40410
Os.51371.1.S1_at--864--2971Chr02:24465691..24465715 (25 bp)
AATGTGTACTCGCTTCGTCTCAAAA
LOC_Os02g40410
Os.51371.1.S1_at--1127--7432Chr04:20810017..20810037 (21 bp)
GTGTACTCGCTTCGTCTCAAAATAA
NONE
Os.51371.1.S1_at--765--1974Chr11:8066337..8066567 (25 bp)
ACTCGCTTCGTCTCAAAATAAATCA
NONE
Target Sequence 
GCCTGTCAACGATGATATGTCTTTGCAAGTTACAACTGATGAATTTCTCCCCTTTTTTTGTACACTGTTTATGTCATTTT
ACGCCAGAAACAAATGTGTACTCGCTTCGTCTCAAAATAAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis