Browse Element(s) Details


Os.51378.1.S1_at

Description gb:AK062675.1
DB_XREF= gi:32972693
TID=Os.51378.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G11, full insert sequence.
FL= gb:AK062675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4263011/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein
LOC_Os03g42610Os.46012.2.S1_x_at8/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.27088.1.A1_x_at6/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.46012.3.S1_x_at4/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42630Os.51378.1.S1_at11/113+23688874..23690856no apical meristem, putative, expressed
LOC_Os03g42630Os.51926.1.S1_x_at1/113+23688874..23690856no apical meristem, putative, expressed
LOC_Os03g42650Os.16695.1.S1_at11/113+23693179..23700433pentatricopeptide, putative, expressed
LOC_Os03g42654NANA3+23708998..23709492hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51378.1.S1_at--182--2131Chr03:23690268..23690292 (25 bp)
ACAGGCTTCATGTCGGCGCGTACAT
LOC_Os03g42630
Os.51378.1.S1_at--225--2651Chr03:23690321..23690345 (25 bp)
AACCAGGGCATGTTCCAGTGGCCGG
LOC_Os03g42630
Os.51378.1.S1_at--384--3971Chr03:23690452..23690476 (25 bp)
CGTGGGCGTTTCTCTGGCGAACGTA
LOC_Os03g42630
Os.51378.1.S1_at--792--8131Chr03:23690554..23690578 (25 bp)
GGACATGGACGACTCCACATGGAGA
LOC_Os03g42630
Os.51378.1.S1_at--681--8051Chr03:23690574..23690598 (25 bp)
GGAGAGCCTTCTGAACATGGCCACG
LOC_Os03g42630
Os.51378.1.S1_at--675--4411Chr03:23690593..23690617 (25 bp)
GCCACGCCACCATCAATTTGGATAA
LOC_Os03g42630
Os.51378.1.S1_at--538--1491Chr03:23690624..23690648 (25 bp)
AGCAAACCATGCATACACGTATTAT
LOC_Os03g42630
Os.51378.1.S1_at--90--7811Chr03:23690683..23690707 (25 bp)
GGTCGTCATCCAAGATATCCACAGT
LOC_Os03g42630
Os.51378.1.S1_at--752--1171Chr03:23690705..23690729 (25 bp)
AGTACAGTACACTACAGTCAGTTAT
LOC_Os03g42630
Os.51378.1.S1_at--321--7571Chr03:23690805..23690829 (25 bp)
GGGCCCTCAAGTTTAATACAAAGCA
LOC_Os03g42630
Os.51378.1.S1_at--262--7072Chr03:23690830..23690854 (25 bp)
GTAAGTCTATTTTGCATACTCATCT
LOC_Os03g42630
Target Sequence 
ACAGGCTTCATGTCGGCGCGTACATGAGCTGGCTGCAGGCGGCGGCGGCGGCCAACCAGGGCATGTTCCAGTGGCCGGCG
GCCACGCAGGCGGGGCTGGTCGGAGGCACCGTGTTCGCGGCGGCGCACAAGGCGGCGGGGACGATGCCGTTCGGCGGCGG
GTGCAGCCAGCAGCAAGCGCGGGACGTGGGCGTTTCTCTGGCGAACGTAGGAGGAGGCGATGCGTTGTTCGGCGGGGCGC
CGCTGGCGAAGGTGGACATGGAATGCGGCGAGCAGGCGCCGCAGCTGGACATGGACGACTCCACATGGAGAGCCTTCTGA
ACATGGCCACGCCACCATCAATTTGGATAATTATTAAGCAAACCATGCATACACGTATTATATACTCAGTTATATACTAG
ATGAAGAATTAATGTGGTCGTCATCCAAGATATCCACAGTACAGTACACTACAGTCAGTTATTAATTAATTAATCAAAAA
TGAAAGTGTAGTGTTGTCACCTAGAAAAAATGTGCCGAAAATATTTTGGTGGAGACGGGGCCCTCAAGTTTAATACAAAG
CAGTAAGTCTATTTTGCATACTCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis