Browse Element(s) Details


Os.16695.1.S1_at

Description gb:AK100295.1
DB_XREF= gi:32985504
TID=Os.16695.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023076N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076N22, full insert sequence.
FL= gb:AK100295.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4265011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein
LOC_Os03g42610Os.46012.2.S1_x_at8/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.27088.1.A1_x_at6/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.46012.3.S1_x_at4/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42630Os.51378.1.S1_at11/113+23688874..23690856no apical meristem, putative, expressed
LOC_Os03g42630Os.51926.1.S1_x_at1/113+23688874..23690856no apical meristem, putative, expressed
LOC_Os03g42650Os.16695.1.S1_at11/113+23693179..23700433pentatricopeptide, putative, expressed
LOC_Os03g42654NANA3+23708998..23709492hypothetical protein
LOC_Os03g42660NANA3+23719356..23722419retrotransposon protein, putative, unclassified
LOC_Os03g42670OsAffx.31222.1.S1_at9/113+23723193..23725536transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16695.1.S1_at--1107--5071Chr03:23699312..23699336 (25 bp)
GCACCGGTTTAATTCTACCCATATG
LOC_Os03g42650
Os.16695.1.S1_at--863--8431Chr03:23699336..23699360 (25 bp)
GGCCATATTCTCTTTTGTTTAGCGC
LOC_Os03g42650
Os.16695.1.S1_at--601--3831Chr03:23699954..23699978 (25 bp)
CTGCTATATGCTATCGCCACTAAGT
LOC_Os03g42650
Os.16695.1.S1_at--563--431Chr03:23700028..23700052 (25 bp)
ATCTTGGTCTGAATCCATTCCTCAA
LOC_Os03g42650
Os.16695.1.S1_at--463--3171Chr03:23700050..23700074 (25 bp)
CAATTTTCTTCTTGGTCCATCTCCA
LOC_Os03g42650
Os.16695.1.S1_at--98--8591Chr03:23700098..23700122 (25 bp)
TGGTCGATCTCAAGTTTGCACCTCA
LOC_Os03g42650
Os.16695.1.S1_at--130--7432Chr03:23700149..23700173 (25 bp)
GTGTTCTTTCTTGGCAGCAAACTCG
LOC_Os03g42650
Os.16695.1.S1_at--911--6231Chr03:23700245..23700269 (25 bp)
GATGGATCCCTAGGTTTGTTTTCTA
LOC_Os03g42650
Os.16695.1.S1_at--1008--2991Chr03:23700269..23700293 (25 bp)
AATGAGCCAAATAACCACACTGAGG
LOC_Os03g42650
Os.16695.1.S1_at--735--6151Chr03:23700290..23700314 (25 bp)
GAGGTTGTACTATGTTTGAAGCCCA
LOC_Os03g42650
Os.16695.1.S1_at--596--2211Chr03:23700329..23700353 (25 bp)
ACAACGTGCCTGCTTATATGTTTGA
LOC_Os03g42650
Target Sequence 
GCACCGGTTTAATTCTACCCATATGGCCATATTCTCTTTTGTTTAGCGCATGGCGGGGGCTATTTCTTNTAATATGCCAA
GGTCTTAAGGTATCAANGACTGCAGACACCTGCTATATGCTATCGCCACTAAGTTAATTTCAAGCTAGTTGNGGATTGAT
TTTGCAACTGAATCAAACTACATATCTTGGTCTGAATCCATTCCTCAATTTTCTTCTTGGTCCATCTCCACGCTCGTTCT
GGCGTTCCTTTGTTGGTCGATCTCAAGTTTGCACCTCAGCATTTCCTCACTCCCAATATTACTNGTGTTCTTTCTTGGCA
GCAAACTCGATATTTTTTCNTTTTTTTGTGGGCTGGGCTTGTTAAGTAACAAAGAGAATTGTTGTTTCATTGCGTTTTTA
GATGGATCCCTAGGTTTGTTTTCTAATGAGCCAAATAACCACACTGAGGTTGTACTATGTTTGAAGCCCAACAGACAACT
AAACACAACGTGCCTGCTTATATGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis